| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_3953 |
|---|
| Symbol | |
|---|
| ID | 6126786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | + |
|---|
| Start bp | 882575 |
|---|
| End bp | 883297 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641651061 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001777594 |
|---|
| Protein GI | 170736334 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.261724 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTCG CCAAAGTTTC CGCCCTCTCG TTCGACCTCG ACGACACCCT GTGGCCGTTC
GGGCCGTCCG TCGTCCGGGC CGAGGCGACG CTGCGCACAT GGCTGATCGA GCACGCGCCC
GATACCGCGA GCGTGCTGCC GACGCAACAG GCGCTCAGTG CGCTCCGTGA GGAATACGAA
CGGTTGCGCC CGGATCTCGC CAGCGACTAT CGCGCGATGC GAATCGGCTC GATCCGGCTT
GCGCTGGAAC GCGCGAACGA AGATGTCTCG CTGACCGAGT CCGCCTACGA CGTCTTCTAC
GCGGCGCGCA ATCGTGTCGA ATTCTACGAA GACGCGTTGC CGGCGCTGGC GTGGTTGAGC
GCCCGCTTTC CGCTGATCGC GGTCACCAAC GGCAATGCCG ACCTCCGGCT GACTGGCGGC
GGCGAATTCT TCCGCACGAC GCTCAGCGCG CGTGCATTCG GCTTCGCCAA GCCTGAGCCC
GAGATCTTCC ATGCGGCGGC TGACGCGCTC GACGTGCGGC CGGCCGAATT GCTGCATGTC
GGCGACGACT TCCACCTCGA TATCGTCGGC GCGCTGAATG CGGGGCTTCA GGCCGCATGG
GTCGTGCGCG AGCCGCGGGC AGAAGAAAAA CCGACGCCGC AGCAGGCGGA AATGCCGCAT
CTCACGTTGC GTGATCTGGC GATGCTGTGT CATGCGCTGG GCGGGCCCGA CACCGTTTCG
TGA
|
|---|
| Protein sequence | MRLAKVSALS FDLDDTLWPF GPSVVRAEAT LRTWLIEHAP DTASVLPTQQ ALSALREEYE
RLRPDLASDY RAMRIGSIRL ALERANEDVS LTESAYDVFY AARNRVEFYE DALPALAWLS
ARFPLIAVTN GNADLRLTGG GEFFRTTLSA RAFGFAKPEP EIFHAAADAL DVRPAELLHV
GDDFHLDIVG ALNAGLQAAW VVREPRAEEK PTPQQAEMPH LTLRDLAMLC HALGGPDTVS
|
|---|
| |