| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_3877 |
|---|
| Symbol | |
|---|
| ID | 6126710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | - |
|---|
| Start bp | 800722 |
|---|
| End bp | 802089 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641650985 |
|---|
| Product | RNA-directed DNA polymerase (Reverse transcriptase) |
|---|
| Protein accession | YP_001777518 |
|---|
| Protein GI | 170736258 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3344] Retron-type reverse transcriptase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.340417 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATGC GACAGGCAAT GCGTCAGATG CCCGTGCGAG CGGGGCGAGC GGGAAGCATA
CGCGGTGAAG CTGCGTCTAT GCCCGTGAGC GACGAAGGCT GTTGCCCGCG CCATGAATCC
GGGGACACAG GGTCACCGCT GCTGATGGCG GCGCTGACGA GGGAGAACCT GAAGCAGGCG
TTCAAACGGG TACGGGCCAA CAAGGGAGCC GCTGGCGTGG ACGGTCTGGA TATTGACCAG
ACGTCGCGCC ATCTGGTGAC GGCGTGGCCC GCGATCCGTG AACAGTTGCT GAAGAGGACG
TACCGGCCCA GTCCGGTACG GCGGGTGACG ATTCCGAAAC CGGACGGAGG CGAGCGCGAG
CTTGGCATCC CGACGGTGAC GGACCGGCTG ATCCAGCAGG CGCTGCTGCA GGTGCTGCAA
CCGGTTCTGG ACCCTGGCTT CAGCGAGCAC AGCTACGGCT TCCGGCCTGG ACGGCGTGCG
CACGATGCGG TGCTTGCCGC GCAGTCGTAC GTGCAGTCGG GTCGGCGAAT CGTGGTGGAT
GTTGATCTGG AGAAGTTCTT CGACCGGGTC AACCACGACA TCCTGATCGA CCGACTGCAG
AAACGTATTG GGGACGCCAG CGTGATCTGG CTGATCCGGG CGTATCTGAA CAGCGGCATC
ATGGATGGCG GCGTGGTTCA GCAGCGCGAA CAGGGCACGC CACAGGGCGG GCCGCTATCG
CCGTTGCTGG CCAACGTGTT GCTCGATGAG GTGGACAAGG AACTGGAGCG GCGAGGCCAC
TGCTTCGCGC GCTATGCCGA CGATGCGAAT GTCTATGTTC GTAGCCGCCG TGCTGGCGAG
CGGGTGATGG CGCTGCTGCG TCGTCTGTAT GGGCAACTGC GGTTGAAGGT CAACGAGACC
AAAAGCGCAG TCGCCAGTGT GTTCGGTCGC AAGTTTCTGG GCTACAGCCT ATGGGTAGCG
TCCGGCGGTG TCATCAAGCG CAAGGTGGCG GCCAGATCGC TGCTGGCGTT CAAACGCCGC
ATTCGTGAAC TGACCGGCCG TAGCGGCGGG CGCAGCATGA AGGACGTGGT GGAACGGTTA
CGGCCTTATG TATTGGGCTG GAAGGCGTAC TTCCGGATGG CGCAGACGCC ACGAGTCTGG
CTGGATCTGG ACAAGTGGAT GCGTCACCGG CTGCGTGTCA TCCAGCTCAA ACACTGGCGC
CGCGGTCCGA CCATCTACCG GGAACTGCGT GCGCTGGGCG CACCGTCCGC TGTGGCGCAA
CAGGTGGCGG CGAACAGCTG TCGCTGGTGG CGTAATAGCG GCAAGCTCCT GAATAGCGTA
TTGACCCTCG CGTACTTCGA CCGGCTGGGT GTGCCCCGAC TCTCATAA
|
|---|
| Protein sequence | MSMRQAMRQM PVRAGRAGSI RGEAASMPVS DEGCCPRHES GDTGSPLLMA ALTRENLKQA
FKRVRANKGA AGVDGLDIDQ TSRHLVTAWP AIREQLLKRT YRPSPVRRVT IPKPDGGERE
LGIPTVTDRL IQQALLQVLQ PVLDPGFSEH SYGFRPGRRA HDAVLAAQSY VQSGRRIVVD
VDLEKFFDRV NHDILIDRLQ KRIGDASVIW LIRAYLNSGI MDGGVVQQRE QGTPQGGPLS
PLLANVLLDE VDKELERRGH CFARYADDAN VYVRSRRAGE RVMALLRRLY GQLRLKVNET
KSAVASVFGR KFLGYSLWVA SGGVIKRKVA ARSLLAFKRR IRELTGRSGG RSMKDVVERL
RPYVLGWKAY FRMAQTPRVW LDLDKWMRHR LRVIQLKHWR RGPTIYRELR ALGAPSAVAQ
QVAANSCRWW RNSGKLLNSV LTLAYFDRLG VPRLS
|
|---|
| |