Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_3641 |
Symbol | |
ID | 6128825 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010515 |
Strand | - |
Start bp | 540580 |
End bp | 542631 |
Gene Length | 2052 bp |
Protein Length | 683 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641650749 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_001777283 |
Protein GI | 170736023 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAAAA AGCTGAACGA AGTATCCGTC GAAGACGACG CAAATCAGAG CGACGAGCAG CCCGCAGCCG CGGCTGCACC GGGCAAGTCC AAGGTGCGCG ATCGTCGCGC CAAGGAAAAG GCGCTGCTGA AGGAAGCGTT CGCGACGAGC ACGCCGGGCA CGGCCGAGGA GCTCGAAGAG CGCCGCGTGA AACTGCGCGC GCTGATCAAG CTCGGCAAGG AGCGCGGCTT CCTCACGTAC GCCGAAATCA ACGACCACCT GCCGGACAAC TTCACCGAGA CGGAAGCCCT CGAGGGCATC ATCGGCACGT TCAACGACAT GGGCGTGGCG GTTTACGAGC AGGCGCCGGA CGCGGAAACG CTGCTCCTGA ACGACAACGC GCCCGCCGCG TCGTCGGACG ATGAAGTCGA GGAGGAAGCG GAAGTCGCGC TGTCCACCGT CGATTCGGAA TTCGGCCGCA CGACCGATCC GGTCCGGATG TACATGCGCG AGATGGGCAC GGTCGAGCTG CTCACGCGCG AAGGCGAAAT CGAGATCGCG AAGCGGATCG AGGACGGCCT GCGCCACATG GTGATGGCCA TCTCCGCGTG CCCGACGACG ATCGCCGACA TCCTCGCGAT GGCCGAACGC GTCGCGAACG AAGAGATCCG CGTCGACGAG CTCGTCGACG GCCTGCTCGA TCCGAATGCT TCGGACTCCG CCGATACGGA CGGCTTCTCC GCGAAGGAAG CGGAAGCCAT CGAGAACGAG GACGAGGAAG CCGAAGAGGA AGAGGAAGAA GAGGAAGAGG AGGAAGACGA CGGTGCCGCG CAGGCATCGG CGAACGCCGC CCAGCTCGAA GCCCTCAAGC GCGCATCGCT CGAGAAGTTC TCGCAGATCA GCGAGTGGTT CGACAAGATG CGCCGCGCGT TCGAGAAGGA AGGCTACAAG TCGAAGGCCT ACCTGAAGGC GCAGGAAACG ATCCAGAGCG AACTGATGAC GATCCGCTTC ACCGCGCGTA CCGTCGAACG CCTGTGCGAC ACGCTGCGCG CGCAGGTGGA CGAAGTGCGT CAGGTCGAGC GTCAGATCCT GCACATCGTC GTCGACAAGT GCGGCATGCC GCGCTCGGAA TTCATCGCGC GCTTCCCGGG CAGCGAGACG GATCTCGACT GGGCCGAGAA GATCACCGCG GAAGGCCATC CGTACAGCGC GGTGCTGTCG CGTAACGTCC CGGCGATCCG CGAACAGCAG CAGCGCCTGC TCGACCTGCA GGCGCGCGTC GTGCTGCCGC TGAAGGACCT GAAGGAAACC AACCGCCAGA TGGCGGCCGG CGAACTGAAG GCGCGTCAGG CGAAGCGCGA AATGACCGAG GCCAACCTGC GTCTCGTGAT CTCGATCGCG AAGAAGTACA CGAACCGCGG CCTGCAGTTC CTCGACCTGA TCCAGGAAGG CAACATCGGC CTGATGAAGG CGGTGGACAA GTTCGAATAC CGTCGCGGCT ACAAGTTCTC GACCTATGCG ACGTGGTGGA TCCGTCAGGC CATCACGCGT TCGATCGCCG ACCAGGCGCG CACGATCCGT ATTCCGGTTC ACATGATCGA AACGATCAAC AAGATGAACC GCATCTCGCG GCAGATCCTG CAGGAAACCG GTCTCGAGCC GGACCCGGCA ACGCTCGCCG AGAAGATGGA GATGCCGGAA GACAAGATCC GCAAGATCAT GAAGATCGCG AAGGAGCCGA TCTCGATGGA AACGCCGATC GGTGACGACG ACGATTCCCA TCTCGGCGAC TTCATCGAGG ACACCAACAC GGTCGCGCCG GCGGATGCCG CGCTGCATGC CAGCATGCGC GACGTCGTGA AGGACGTGCT CGATTCGCTG ACGCCGCGCG AGGCGAAGGT GCTGCGGATG CGTTTCGGTA TCGAGATGAG CACCGATCAC ACGCTCGAGG AAGTCGGCAA GCAGTTCGAC GTCACGCGCG AGCGGATCCG TCAGATCGAG GCCAAGGCGC TGCGCAAGCT GCGTCACCCG AGCCGTTCCG ACAAGCTGAA GTCGTTCCTC GAAGGGAACT GA
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Protein sequence | MTKKLNEVSV EDDANQSDEQ PAAAAAPGKS KVRDRRAKEK ALLKEAFATS TPGTAEELEE RRVKLRALIK LGKERGFLTY AEINDHLPDN FTETEALEGI IGTFNDMGVA VYEQAPDAET LLLNDNAPAA SSDDEVEEEA EVALSTVDSE FGRTTDPVRM YMREMGTVEL LTREGEIEIA KRIEDGLRHM VMAISACPTT IADILAMAER VANEEIRVDE LVDGLLDPNA SDSADTDGFS AKEAEAIENE DEEAEEEEEE EEEEEDDGAA QASANAAQLE ALKRASLEKF SQISEWFDKM RRAFEKEGYK SKAYLKAQET IQSELMTIRF TARTVERLCD TLRAQVDEVR QVERQILHIV VDKCGMPRSE FIARFPGSET DLDWAEKITA EGHPYSAVLS RNVPAIREQQ QRLLDLQARV VLPLKDLKET NRQMAAGELK ARQAKREMTE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY RRGYKFSTYA TWWIRQAITR SIADQARTIR IPVHMIETIN KMNRISRQIL QETGLEPDPA TLAEKMEMPE DKIRKIMKIA KEPISMETPI GDDDDSHLGD FIEDTNTVAP ADAALHASMR DVVKDVLDSL TPREAKVLRM RFGIEMSTDH TLEEVGKQFD VTRERIRQIE AKALRKLRHP SRSDKLKSFL EGN
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