Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_3599 |
Symbol | prpD |
ID | 6126433 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010515 |
Strand | + |
Start bp | 483708 |
End bp | 485159 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641650706 |
Product | 2-methylcitrate dehydratase |
Protein accession | YP_001777241 |
Protein GI | 170735981 |
COG category | [R] General function prediction only |
COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.464722 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGCCC CGGTCTCCAA CGTCCGCCCC GCGCCGGATT CGGTACTCGT CGACATCGTC GACTACGTGC TGAACACCGG CATCGACGGC GCGCTCGCGC TGGAGACGGC GCGTCATTGC CTGATCGACA CGCTCGGATG CGGACTCGAG GCGCTGTCCT ACCCTGCCTG CACCAAGCTG CTCGGCCCCG TCGTGCCCGG CACGATCGTG CCGAACGGCG CGAAGGTGCC GGGCACGTCC TTCCAGCTGG ATCCCGTCCA GGCCGCGTTC GACATCGGCG CGATGATCCG CTGGCTGGAC TTCAACGACA CCTGGCTCGC CGCCGAATGG GGTCATCCGT CCGACAACCT CGGCGGGATC CTGGCGACGG CCGACTGGCT CTCCCGCACG GCCCGCGCGG CCGGCCGGAA GCCGCTCGCG ATGCGCGACG TGCTAGTCGC GATGATCCAG GCCCACGAGA TCCAGGGCTG CCTCGCGCTC GAGAACTCGT TCAACGCGGT CGGGCTCGAC CACGTGCTGC TCGTGAAGGT CGCATCGACG GCCGTCGTCG GGCGCCTGCT CGGGCTCACG CGCGACGAGC TGATCAACGC GGTCTCCAAC GCATTCGTCG ACGGCCACGC GCTGCGTACG TACCGCCATG CGCCGAACAC CGGTTCGCGC AAATCGTGGG CGGCCGGCGA TGCCACGTCC CGCGCGGTGC GCCTCGCGCT GATCGCGAAA ACGGGTGAAA TGGGTTATCC GTCGGCGCTC ACCGCCAAAA CCTGGGGCTT CTACGACGTG CTGTTCGACG GCAAGCCGTT CCGCTTCCAG CGCCCGTACG GCACGTACGT GATGGAAAAC GTGCTGTTCA AGATCGCATT CCCCGCCGAA TTTCATGCGC AGACGGCCGC CGAGGCCGCG CTGCAGCTGC ACGCGCAGCT CGCCGCGGCG GGCCGCACGA CCGACGACAT CAGCCGGATC ACGATCCGCA CGCACGCGGC CGCGATCCGC ATCATCGACA AGCAGGGCCC GCTCGCCAAT CCGGCCGACC GCGACCACTG CATCCAGTAC ATGGTCGCCG TGCCGCTGCT GTTCGGCCGG CTGACCGCGG CCGACTATGA AGACGCGGCC GCGGCGGACC CGCGCATCGA CGCGCTGCGC GCGAAAACCG TGTGCGTCGA GGATCCGCAG TTCACAAAGG ATTACCACGA TCCGGACAAG CGATCGATCG CGAATGCGCT GACGATCGCG TTCACGGACG GATCGAAGCT TGCCGAAGTG GCGGTCGAGT ATCCGCTCGG CCATCGGCGG CGGCGCGCCG AAGGCGTTCC GCTCCTGGTC GAGAAGTTCA GGACCAACCT CGCCCGTCGC TTTCCGGCCA AGCAGCAACA AGCGATTCTC GACGTGTCGC TGGACCAGGC AAAGCTCGAA GCGATGCCGG TCGATGAGTA CGTCGACTTG TACGTGATAT AG
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Protein sequence | MSAPVSNVRP APDSVLVDIV DYVLNTGIDG ALALETARHC LIDTLGCGLE ALSYPACTKL LGPVVPGTIV PNGAKVPGTS FQLDPVQAAF DIGAMIRWLD FNDTWLAAEW GHPSDNLGGI LATADWLSRT ARAAGRKPLA MRDVLVAMIQ AHEIQGCLAL ENSFNAVGLD HVLLVKVAST AVVGRLLGLT RDELINAVSN AFVDGHALRT YRHAPNTGSR KSWAAGDATS RAVRLALIAK TGEMGYPSAL TAKTWGFYDV LFDGKPFRFQ RPYGTYVMEN VLFKIAFPAE FHAQTAAEAA LQLHAQLAAA GRTTDDISRI TIRTHAAAIR IIDKQGPLAN PADRDHCIQY MVAVPLLFGR LTAADYEDAA AADPRIDALR AKTVCVEDPQ FTKDYHDPDK RSIANALTIA FTDGSKLAEV AVEYPLGHRR RRAEGVPLLV EKFRTNLARR FPAKQQQAIL DVSLDQAKLE AMPVDEYVDL YVI
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