| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_3508 |
|---|
| Symbol | |
|---|
| ID | 6126343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | - |
|---|
| Start bp | 380341 |
|---|
| End bp | 382002 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641650616 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001777151 |
|---|
| Protein GI | 170735891 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00360798 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAATC CTTTCGTTTC GTCAGCCGCG CGCCAATCGC GCGGCGTATC GCCCGCCGGC
GCCGCGCTTC GCTGCATCGC CGCGTCGTTG CTGCTGGCCG GCGCCGCGAC GCACGCGTTT
GCGGCGCCCA CGGGCAAGAC GCTCGTGTAC TGCACCGAAG GCAGCCCGGC CGGCTTCGAT
CCCGGCCAGC ACACGACGAG CACCGATTTC GATGCGAGCA CGTACCCGGT CTACAACGGG
CTCGTGCAAT TCAAGCGCGG CACGCTCGAC CTCGAACCGG CGCTCGCGAC GAGCTGGGAC
GTGTCGCCCG ACCAGCGCAC GATCACGTTC CACCTGCGGC GCGGCGTGAA ATTCCAGACG
ACCGCATGGT TCAAGCCGAC GCGGCCGTTC CAGGCCGACG ACGTCGTGTT CACGTTCCGC
CGGATGCTCG ACCCGGACGA TCCGTTCCGC AAGGCGTATC CGGTCAGCTT CCCGTATTTC
AGCGATCTCG GCTTCGACCA CAACATCGAA CGCATCGAGA AGGTCGACGA CTATACGGTG
CGCTTCGTGC TGAAGTCGCC CGACGTCGTG TTCGTGCGCA ATCTCGCGAT GGCGTTCGCG
TCGGTGCTGT CGGCCGAATA TGCGGGGCAG CTCGCCGCGC GCCATCGCGA GTCGGACATC
AACCAGTTCC CGGTCGGCAC GGGGCCGTTC GTGTTGCGTA CGTACCAGAA GGATGCGCTG
ATCCGCTACG ACGCGAATCC CGACTACTGG AAGCCGGACG ACGTGAAGCT GTCCCGCCTC
GTGTTCGCGA TCACGCCCGA TCCGGCCGCG CGGCTGCAGA AGCTCGTGGC CGGCGAGTGC
CAGGTATCGG CGTTTCCGCG GCCGGCCGAT CTCGAGACGG TGCGGCGCGA CCCGAAGCTG
ACGCTGTTTT CCGGGACGGG TTTCAACGTC GGCTTCGTCG CGTACAACAC GCAGCATCCG
CCGCTCGATC GCGTCGACGT GCGGCGCGCG CTCGACATCG CGATCGACAA GACGGCGATC
ATCAAGACCG TGTTCAACGG CGACGCGACG GTCGCGACGA ACCCGATGCC GCCCGCGCAA
TGGTCGTACA ACCCGCGGCT GAAGGATGCG CCGCGCGATC CGGCCGTCGC GAAGGCGCTG
CTCGCGCAGG CCGGCTTCCC GAACGGTTTC GACCTGACGC TGTGGGCGAT GCCCGTGCAG
CGCCCGTACA ACCCGAACGC GCAACTGATG GCGCAACTGA TCCAGCAGGA CTGGGCGAAG
ATCGGCGTGC GCGCGAAGAT CGTCAGCTAC GAATGGGGCG AGTACAACCG CCGCGCGAAG
CACGACGGCC AGCACGACGC GATCCTGTAC GGCTGGTCGG GCGACAACGG CGACCCCGAC
AACTGGCTCG GCACGCTGCT CGGCTGCGAG GCGGTGCACG GCAGCAATCT CGCGAAGTGG
TGCAACAAGG ACTTCGAGCA GCTCGTGACC GCCGCGCGTT CGAACGGGGA CGTCGCGAAG
CGCACGGCGC TGTACGAGCA GGCGCAGGTG GTGTTCAAGG ATCAGGTGCC GTTCACGCCG
ATCGCGACGT CGATCGTGTC GTTGCCGATC TCCAGACGCG TGCACGGGCT GACGTTCTCG
CCGCTCGGCG GGCACCGGTT CGACGGTGTG TGGCTCGATT GA
|
|---|
| Protein sequence | MKNPFVSSAA RQSRGVSPAG AALRCIAASL LLAGAATHAF AAPTGKTLVY CTEGSPAGFD
PGQHTTSTDF DASTYPVYNG LVQFKRGTLD LEPALATSWD VSPDQRTITF HLRRGVKFQT
TAWFKPTRPF QADDVVFTFR RMLDPDDPFR KAYPVSFPYF SDLGFDHNIE RIEKVDDYTV
RFVLKSPDVV FVRNLAMAFA SVLSAEYAGQ LAARHRESDI NQFPVGTGPF VLRTYQKDAL
IRYDANPDYW KPDDVKLSRL VFAITPDPAA RLQKLVAGEC QVSAFPRPAD LETVRRDPKL
TLFSGTGFNV GFVAYNTQHP PLDRVDVRRA LDIAIDKTAI IKTVFNGDAT VATNPMPPAQ
WSYNPRLKDA PRDPAVAKAL LAQAGFPNGF DLTLWAMPVQ RPYNPNAQLM AQLIQQDWAK
IGVRAKIVSY EWGEYNRRAK HDGQHDAILY GWSGDNGDPD NWLGTLLGCE AVHGSNLAKW
CNKDFEQLVT AARSNGDVAK RTALYEQAQV VFKDQVPFTP IATSIVSLPI SRRVHGLTFS
PLGGHRFDGV WLD
|
|---|
| |