| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_3330 |
|---|
| Symbol | |
|---|
| ID | 6126065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | - |
|---|
| Start bp | 174287 |
|---|
| End bp | 176407 |
|---|
| Gene Length | 2121 bp |
|---|
| Protein Length | 706 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641650440 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001776975 |
|---|
| Protein GI | 170735715 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.480846 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTTCA ATACGCGTAA AGTCCGTCCG GTCCTGCAGG ACGAAGTGAC GGAGTGCGGC
CTGGCCTGCC TCGCGATGAT CGCGTCGTGG CACGGGCGCG AAACGACGTT GCGCACGCTG
CGCAACCGCT ATCCGGTGCG GATCGACTCC GGCCTGTCGT TCTTCGACCT GATGGAAATC
TCGAACGATC TCGGCCTGCG CGCACGCGGG CTGCAGTTCG ATGCGGGCGA GCTCGACGCG
CTCAAGACGC CGTGCATCCT GCACTGGGGG ATGAACCACT ATGTCGTGCT GACGAAGGTC
GGCTACGGCA GCGTGCACAT AGTCGACCCC GCGCTCGGCG AGACGAGGCT GCCGCTCGCG
CAGGCGCTCA CGCACATCAC CGGCTATGCG CTCGAACTGA ATCCGGACAT CGGTTTCTCG
CGGGCGGGGC AGGCCGACCG CATCCGGCTG CGCGACTACC TCGAAGGGCT GACCGGCATC
CGCAAGAGCC TCGCGATCGG CATCGTGGGC GGCGTCGCCG CGCAGCTCCT GCTGCTGCTC
GGCCCGTCGT ACGTGCAACT GACGATCGAC GAGGCGCTGA AGAAGACCGA CGTCGACATC
CTGTACCTGC TGACGATCCT GTTCGCGATC GTGTTCCTGT TCGACACGCT CTACGCGAAT
CTCGTCGGCA ACATCAAGAG CTACCTGCGC AACATCGTGT CGCAGCAGTT GTCGGCGAAC
ATGGTCGGCC ATCTCGCGCG GCTGCCGATC GGTTATTTCC TGTTTCACAA CACCGGCGAT
TCGATCTCGC GTGTGTCGTC GGTGTCGGAG GTCGGGCGAT TTCTCGTCGA CGGGCTGGTG
GGCGGGCTGC TGAACCTCGT CACCTGCACG CTGACGCTCG TGCTGATGCT GTATTACAGC
CCCGTACTGG CCGGTATCAG CCTCGCGGGG ATGGTGCTGT TCGCGTTGAG CCGGCTCGCG
ATCCAGCCGC AACTGCAGGA CGCGATGTCG CAGATCCTCA CGCGCGGCGC CGAGGCCGAT
GCGCTGCTGA TCGAGAACAT CCGGTCCGCG CATTCCATCA AGCTGCTGTC GGCGGAGACC
GCGCGCAGCA GCCTGTGGGT CAACGCGTTC ACGCAGAAAC TGCAGGCGAT GCGCCAGCAG
GAGCGGCTGC AACTGCTGTT CGACGCGATC TCGAAGGGGA TCGTGCACGT CGAGCAGCTC
GTGATCGTCA CGTACGGCGC ATGGCTCGTG ATGCACGGCC AGAGCACGAT CGGCGTGATC
TACGCGTTCA TCCAGTACAA GAACCTGTTC GCGGACAAGT TCATCGATTC GATCCAGCTC
TACGTGCGGC GCAAGGTGCT GCAGGTGCAC ATGGATCGCG TCGCGGACGT GCTGCAGACC
GAGACCGAGG AGCCGGCGCC GGACGCGGTC GTGCGGCCGG TCGACGGGTT CGACGGCGCG
CTGTCGATCC GCGCGCTGTC GTACACGCCG AAGGGCGGCC ATCGGCCGAT CCTGAGCGAT
GTCGCGCTCG ACGTGCCGGC CGGCAGCAAG ATCGCGATCG TCGGCCGCAC CGGCAGCGGC
AAGACGACGC TGCTGAACTT GATCTGCGGG CTCGTGCGGC CCAAGCCCGG CACGCTGTTC
GTCGGCGGCG TCGATCTCGC GGAAGTGAAC CTGCGGCAAT ACCGCAAGCA TCTCGCGGCC
GTCACGCAGT CCGACCAGCT GTTTCGCGGG ACGATCCGCG ACAACATCAC GAATTTCGCG
CCCGCGCCGC GGATCGGCGC GATGTTCGAC GCGGCGAAGC TCGCGTGCAT CCACGACGAG
ATCGAGCGGC TCGACCATCG CTACGACACG CCGCTCGGCG ATACGCAGAA ATTCCTGTCG
GCCGGCCAGA TGCAGAGATT GCTGATCGCG CGGGCGCTGT ATTGCGAGCC GCGCCTGCTG
ATCCTCGACG AGTTTTCGTC GAACCTCGAC CAGGCGACCA CGCACGAGAT CTGCCGCAAC
GTGCTGACGC TGCCGTGCAC GATCGTGCTC GTCACGCACG ATGCGTCGAT CCTGTCGATG
GTCGACCGGA TCTACCGGAT GGATGACGGC GTGCTGACCG ATGCGACCGA CGCATGGCGC
ACGAACGAGG AGGCGCGGTG A
|
|---|
| Protein sequence | MLFNTRKVRP VLQDEVTECG LACLAMIASW HGRETTLRTL RNRYPVRIDS GLSFFDLMEI
SNDLGLRARG LQFDAGELDA LKTPCILHWG MNHYVVLTKV GYGSVHIVDP ALGETRLPLA
QALTHITGYA LELNPDIGFS RAGQADRIRL RDYLEGLTGI RKSLAIGIVG GVAAQLLLLL
GPSYVQLTID EALKKTDVDI LYLLTILFAI VFLFDTLYAN LVGNIKSYLR NIVSQQLSAN
MVGHLARLPI GYFLFHNTGD SISRVSSVSE VGRFLVDGLV GGLLNLVTCT LTLVLMLYYS
PVLAGISLAG MVLFALSRLA IQPQLQDAMS QILTRGAEAD ALLIENIRSA HSIKLLSAET
ARSSLWVNAF TQKLQAMRQQ ERLQLLFDAI SKGIVHVEQL VIVTYGAWLV MHGQSTIGVI
YAFIQYKNLF ADKFIDSIQL YVRRKVLQVH MDRVADVLQT ETEEPAPDAV VRPVDGFDGA
LSIRALSYTP KGGHRPILSD VALDVPAGSK IAIVGRTGSG KTTLLNLICG LVRPKPGTLF
VGGVDLAEVN LRQYRKHLAA VTQSDQLFRG TIRDNITNFA PAPRIGAMFD AAKLACIHDE
IERLDHRYDT PLGDTQKFLS AGQMQRLLIA RALYCEPRLL ILDEFSSNLD QATTHEICRN
VLTLPCTIVL VTHDASILSM VDRIYRMDDG VLTDATDAWR TNEEAR
|
|---|
| |