Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_2240 |
Symbol | |
ID | 6120856 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | - |
Start bp | 2369427 |
End bp | 2370293 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641650181 |
Product | RNA polymerase factor sigma-32 |
Protein accession | YP_001776721 |
Protein GI | 170731288 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCGAA ATACATCAGT GGTGCTTGTG GGAAACAACT TGCCTGTTCC AAATGCCCTC GGTTCGTTGG AGGCATACAT CAGTGCCGTG CACCAGATCT CGGTACTTTC GGTTGATGAG GAGCAGCTAT TGGCTCGCCG TTATCGTGAT CAACAGGATT TAGATGCTGC ACGTGAGTTG GTGCATTCGC ACTTGCGTTT TGTTGTTCGG GTAGCGCGCG GTTATAGCGG TTACGGCCTG TCTTTAGGCG ACTTGATACA AGAGGGTAAT ATCGGTCTGA TGAAAGCTGT AAAGCGCTTT GATCCGGATA TGGGTGTCCG TTTGGTTTCT TTTGCAATGC ATTGGATTCG CGCTGAAATG CATGAGTTTA TTTTGAAGAA TTGGCGCATC GTTAAAGTTG CTACCACCAA AGCGCAGCGA AAGCTTTTTT TTAACCTTCG GAAATCTAGA ACCCGTCTGG GCTGGATGAA TGCCGAGGAA GTTAGTGCAG TTGCTAGGGA TCTTAACGTC TCTGAACGTG AGGTATTGGA GATGGAGTCA CGTTTGTCAG GGCGCGATAT TGGTTTCGAC GCGCCGGAGG AAGACAACGC TCCGCTATCG CCTGTTGGCT ACTTGATTGC TAATGATGGA GATCCTTCTC AAGCTTACGA ACGTGGTAAT AGTGAGGAAA CCCAATTACG CCTATTACAG GAAGGTTTGT CTGTCCTTGA TACCCGTTCA CGCGATATTA TTCAGCGTCG CTGGCTGGAA ACAGATAAGA AAATCACGTT GCAAGAATTA GCTGAAGAAT ATGGAGTTTC AGCAGAACGT ATTCGGCAGA TTGAAGCTAA TGCGCTTAAA AAAATGAAGG TGCTGTTCGC TGCTTGA
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Protein sequence | MTRNTSVVLV GNNLPVPNAL GSLEAYISAV HQISVLSVDE EQLLARRYRD QQDLDAAREL VHSHLRFVVR VARGYSGYGL SLGDLIQEGN IGLMKAVKRF DPDMGVRLVS FAMHWIRAEM HEFILKNWRI VKVATTKAQR KLFFNLRKSR TRLGWMNAEE VSAVARDLNV SEREVLEMES RLSGRDIGFD APEEDNAPLS PVGYLIANDG DPSQAYERGN SEETQLRLLQ EGLSVLDTRS RDIIQRRWLE TDKKITLQEL AEEYGVSAER IRQIEANALK KMKVLFAA
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