Gene Xfasm12_2212 details

Gene Information

• Locus tag: Xfasm12_2212
• Symbol: prfA
• ID: 6120828
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: +
• Start bp: 2332964
• End bp: 2334049
• Gene Length: 1086 bp
• Protein Length: 361 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 641650155
• Product: peptide chain release factor 1
• Protein accession: YP_001776695
• Protein GI: 170731262
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0216] Protein chain release factor A
• TIGRFAM ID: [TIGR00019] peptide chain release factor 1

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.189214
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACCGA CCCTGCGTCG TAAACTGGAA GCACTCGCCG AGCGCCATGA AGAACTCGAA 
CGCTTGCTCT CTGATCCCAA AATCGCCTCT GACACCGACA GATTCCGTAC ATACTCCCGC 
GAATTGGCGC AACTCGCACC GATTGCGACC ACACTAGCCG AAGAAACCCG CACCAAAGCC 
GATCTAGCCG CCGCTGAAAC ACTACGCACC GACCCTGAAA TGCGCGAACT TGCCGAACAA 
GAAATCGCCA TAGCCCAAGC ACACCTGACC ACACTTGACG AACAACTTCA GCGACTCCTG 
ATTCCTCAAG ACCCCCGAGA CGAATGCAAC CTATTCCTGG AAGTACGCGC CGGCACTGGT 
GGCGACGAAG CTGCAATCTT TGCCGGCAAC CTCTTCCGGA TGTACACCCG CTACGCCGAA 
CGCCAGCGCT GGAAAGTCGA AGTGGAATCA GATACTCCCG GCGAACATGG CGGCTATAAA 
GAAATCATAG CGCGCATTGT CGGACGCGGC GCCTACTCCC GACTTAAATT TGAATCCGGC 
ACACACCGCG TACAACGCGT GCCTGCAACC GAATCCCAGG GACGCATCCA TACTTCAGCA 
GCCACCGTCG CGATTATTCC AGAAGCCGAC GAAATCGCAG ACATCTCGAT CAACCCCGCT 
GACCTCAAGA TCGACACATT CCGCTCCTCC GGTGCCGGCG GCCAACACGT CAACAAGACC 
GAATCGGCAA TCCGCATCAC CCATCTCCCA ACCGGCGTCG TCGTCGAATC CCAAACCGAA 
CGCAGCCAAC ACGCCAACCG CGACAAAGCA ATGAAAAGGC TCAAAGCACA ACTGATCGAA 
AGCGAACGCA GCCAACAAGC CACAGCCGAA GCAATGACAC GTAAACTGCA AGTCGGCAGC 
GGCGACCGCA GCCAACGTAT CCGCACCTAC AACTTTCCCC AAGGCCGGAT CACCGATCAC 
CGTGTCGAAA ACCTGACACT CTACGACCTT CCCAACATCA TCGAAGGCGA CCTAGACCCC 
CTGATCGACC GACTACGACA AGAACACCAA GCCGAAGAAC TCGCACGACT GAGCAACGCC 
CCATAA 

 

Protein sequence

MKPTLRRKLE ALAERHEELE RLLSDPKIAS DTDRFRTYSR ELAQLAPIAT TLAEETRTKA 
DLAAAETLRT DPEMRELAEQ EIAIAQAHLT TLDEQLQRLL IPQDPRDECN LFLEVRAGTG 
GDEAAIFAGN LFRMYTRYAE RQRWKVEVES DTPGEHGGYK EIIARIVGRG AYSRLKFESG 
THRVQRVPAT ESQGRIHTSA ATVAIIPEAD EIADISINPA DLKIDTFRSS GAGGQHVNKT 
ESAIRITHLP TGVVVESQTE RSQHANRDKA MKRLKAQLIE SERSQQATAE AMTRKLQVGS 
GDRSQRIRTY NFPQGRITDH RVENLTLYDL PNIIEGDLDP LIDRLRQEHQ AEELARLSNA 
P