Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_2196 |
Symbol | rpoB |
ID | 6120807 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | - |
Start bp | 2314629 |
End bp | 2318783 |
Gene Length | 4155 bp |
Protein Length | 1384 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641650134 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001776679 |
Protein GI | 170731246 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.035759 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACATCCT ATTCGTTCAC CGAAAAGAAG CGTATCCGCA AGGATTTCGG CAAGCATCGT TCGATCCTCA AGGTGCCGTT TTTGTTAGCT ATCCAGGTGG ACTCTTATCG TGCATTCCTT CAAGGAGATG TGGAGTCCAG CCAACGTAAA GACATTGGTT TACATGGGGC ACTGAAATCA GTATTTCCTA TTGTCAGTTA CAGCGGTAAT GCTGCTTTGG AATATGTCGG TTACAAACTT GGTGAGCCGA TGTTCGATGA ACGTGAATGT CGGCAGCGTG GTATGAGTTA TGGTGCGCCG CTGCGCGTGA CCGTTCGTTT AGTCATTTAT GATCGTGAGT CATCGACAAA AGCAGTTAAG TACATTAAGG AACAGGAAGT ATATCTTGGT GAAATCCCGT TGATGACTGA AAACGGTACC TTCATTGTGA ATGGTACCGA GCGAGTCATT GTTTCGCAGT TGCATCGATC CCCAGGTGTC TTTTTTGACC ACGACCGTGG CAAGACACAC AGTTCGGGTA AATTGCTTTA TAGCGCTCGT ATCATTCCTT GTCGAGGTTC ATGGTTGGAC TTCGAATTCG ACCCAAAAGA TGCGCTATTT ACCCGTATTG ACCGTCGCCG TAAGTTGCCG GTATCCATTT TGTTGCGTGC ACTCGGTTAT TCTAACGAGG AAATACTTGG CGAATTTTTT GAAATTAATA CATTTCATAT TAATCCTGAT AAAGGGGTGC AGCTTGAGTT GGTTCCCGAG CGGCTACGTG GTGAGATATT AAGTTTCAAT CTGACTGACG GTGGCGGTGT GATTGTTGAA GCCGGTAAGC GCATCACTGC GCGTCATGTG AAGCAGTTGG AGGCTTCGGG TATTTCCGCA TTAGCTGTGC CGGATGATTA TCTAATTGGC CGTATTTTAT CGCATGACGT GATTGATGCG ACGACTGGTG AATTGTTAGC CAGTGCCAAC AGTGAGGTGA ATGAGGATCG CATAGTTGCT TTTCGCAAGG CTGGTATCGA GTCGGTCGGA ACCCTTTGGG TGAACGATTT GGATCGTGGT GCTTATCTAT CTAATACTTT GCGTATTGAT CCGACTAGAA CTCAGCTTGA GGCGCAGGTC GAAATATATC GCATGATGCG TCCAGGAGAG CCGCCAACTA AGGAGGCAGC TCAAAACTTA TTTCATAATT TATTTTTTAC TTTTGATCGT TACGACTTAT CAATGGTTGG TCGCATGAAG TTTAATCGTC GTGTTGGCCG TAAAGAAGTC GCTGGCGAGC CTGTTCTTTA CGATAAAAAG TATTTTTCAG ATCGTAATGA TGAAGAATCC AGGCGCTTAG TTTCTAAGCT GGGCGAAACT TCCGATATCC TTGATGTGAT TAAAGGTTTG TGTGAGATTC GTAATGGTCG TGGTGTTGTG GATGATATTG ATCATCTGGG TAACCGTCGG GTGCGTTCTG TCGGTGAGAT GGCAGAAAAT GTCTTCCGTG TTGGGCTTGT CCGTGTCGAA CGTGCTGTCA AAGAACGTTT GTCAATGGCC GAATCCGAGG GGCTTACGCC TCAAGAGTTG ATCAATGCTA AACCGGTTGC TGCCGCGATT AAGGAATTCT TCGGTTCCTC CCAATTGTCC CAGTTCATGG ATCAGAATAA TCCTTTGTCG GAAGTGACTC ATAAGCGTCG TCTTTCGGCA TTGGGTCCAG GTGGATTAAC GCGTGAGCGA GCTGGTTTCG AAGTGCGTGA TGTTCATTTA AGTCATTATG GCTGCTTATG TACGATCGAA ACCCCTGAAG GTCCCAATAT TGGCCTAATC AATTCACTGG CCGTGTTTGC TCGTACCAAC CAATATGGCT TCCTTGAGAC ACCGTATCGC AAGGTTGTGG AAGGTCGTGT TACCGATGAA GTTGAGTACT TGTCGGCGAT TGAGGAAAAT CAGTATGTTA TTGCACAGGC GAACACGCTG ACTGATGATA ATGGGCAATT AACCGAGTCA TTTGTGCCAT GTCGTTTTCA GGGGGAGTCG CTCTTGAAGC CCCCATCTTA TGTTCATTAC ATGGATGTTT CGCCGATGCA AACAGTGTCA GTTGCTGCTG CTTTGGTGCC ATTCTTGGAG CATGATGATG CGAATCGCGC ATTAATGGGT GCGAACATGC AGCGCCAAGC TGTGCCAACC TTGCGTGCTC AGAAACCGTT GGTTGGTACT GGTATTGAGC GTACAGTGGC GCTTGACTCG GGTGTGACTG TGAATGCGCG CCGTGGAGGT GTGATTGATC AGGTCGATGC TGGCCGTATC GTGGTTAAAG TCAACGAAAG TGAGATTATT GGTGCCACTG ATGCTGGTGT TGATATATAT GGATTGATCA AATATACACG CTCAAATCAG AATACATGTA TCAATCAGCG TCCCCTTGTG AATGTTGGCG ACATAATTGC TAGTGGTGAC GTACTGGCTG ATGGCCCATC GACTGACATT GGCGAATTGG CTCTTGGGCA AAACATGCTG ATCGCTTTTA TGCCTTGGAA TGGCTACAAC TTCGAAGATT CAATTTTGCT TTCTGAACGC GTTGTTGAAG AGGATCGCTA CACTACAATC CACATTGAGG AGCTGACTTG TATTGCGCGC GATACCAAGT TGGGATCAGA GGAAATTTCA GCTGACATCC CTAACGTCTC TGAGCAGGCA TTAAATCGTC TAGATGAGTC TGGTGTGGTG TACATCGGTG CTGAGGTGCG CGCTGGCGAT ATTTTGGTTG GTAAAGTCAC GCCGAAGGGA GAAAGTCAGT TAACTCCAGA AGAAAAGTTG CTGCGTGCCA TCTTTGGTGA AAAAGCTTCG GATGTGAAGG ATAGTTCGCT TCGTGTACCT CCGGGCATGG ATGGTACTGT AATTGATGTC CAGGTGTTCA CCCGTGATGG TATTGAGAAG GACAAGCGTG CGCACCAGAT CGAAGAGTAT GAAATCAAGC GTGTCAAAAA GGATTTTGAT GATCAATTTC GTATTCTAGA AGGTGCTATT TATGCTCGTT TGCGTTCTCA GATTGTAGGT AAGGTGGTTA ACTCCGGTGT TGATATTAAA AAGGGTGAGG TCATCACTGG TCCTTATCTT GATGGTTTGA AGAAGAGTGA CTGGTTTGCA TTGCGTATGA AGGATGAGGT TGCTGTTGAG GCAATCGATA GGGCGCAGAA ACAGATACAG GCGTACCAGA AAGAGTTTGA TCAGCGTTTT TCTGACAAGC GTAGCAAAAT CACTCAGGGG GACGACTTGG CTCCGGGTGT ATTGAAAATG GTCAAGGTGT TTTTGGCTGT AAAGCGTTGT ATTCAGTGTG GCGATAAGAT GGCCGGACGT CATGGTAATA AAGGTGTGAT TTCCAACATT GTTCCCGTTG AAGACATGCC ATTTATGGAG GATGGGACAC CTGTCGATAT CGTGTTAAAT CCGTTGGGCG TTCCCTCTCG TATGAATATT GGCCAAATCT TAGAGGTGCA TTTGGGGTGG GCAGCTAAGG GTTTGGGGCA TCGAATTCAG CGTATGCTGG AGGCCAATGC TGCTATTGCG GACTTAAGAA AATTTCTTAA TGAAATTTAT AATCATGATA AAAGCTTGGT TGGCGAGCGT GTAGATCTGT CTCAGTTCAG TGATGACGAA TTGCTGAATA TGGCTAAGAA TCTGACTGAT GGTGTGCCGA TGGCGAGCCC GGTTTTCGAT GGTGCCTCTG AACAAGAGAT CAAGCGTATG CTGGATCTCG CGGAATTGCC GACCGGCGGT CAGACCCAAC TCTACGATGG CCATACTGGG GAACCTTTCG ATCGTAAGAC TACGGTCGGT TACATGCACT ATTTAAAATT GAACCATTTG GTTGATGACA AGATGCACGC TCGTTCAACT GGCCCTTATT CACTGGTTAC GCAGCAACCA TTGGGTGGTA AGGCCCAGTT TGGAGGGCAG CGTTTTGGTG AAATGGAAGT TTGGGCCTTG GAAGCTTATG GCGCAGCTTA CACTCTGCAG GAAATGTTGA CTGTAAAGTC TGATGATGTG CAGGGGCGTA ATCAGATGTA CAAGAACATT GTTGATGGCG ATCATCAGAT GGTGGCAGGT ATGCCTGAAT CTTTTAATGT TCTCGTGAAA GAAATCCGCT CCTTAGCAAT TAATATTGAG TTGGAAGATA ACTAA
|
Protein sequence | MTSYSFTEKK RIRKDFGKHR SILKVPFLLA IQVDSYRAFL QGDVESSQRK DIGLHGALKS VFPIVSYSGN AALEYVGYKL GEPMFDEREC RQRGMSYGAP LRVTVRLVIY DRESSTKAVK YIKEQEVYLG EIPLMTENGT FIVNGTERVI VSQLHRSPGV FFDHDRGKTH SSGKLLYSAR IIPCRGSWLD FEFDPKDALF TRIDRRRKLP VSILLRALGY SNEEILGEFF EINTFHINPD KGVQLELVPE RLRGEILSFN LTDGGGVIVE AGKRITARHV KQLEASGISA LAVPDDYLIG RILSHDVIDA TTGELLASAN SEVNEDRIVA FRKAGIESVG TLWVNDLDRG AYLSNTLRID PTRTQLEAQV EIYRMMRPGE PPTKEAAQNL FHNLFFTFDR YDLSMVGRMK FNRRVGRKEV AGEPVLYDKK YFSDRNDEES RRLVSKLGET SDILDVIKGL CEIRNGRGVV DDIDHLGNRR VRSVGEMAEN VFRVGLVRVE RAVKERLSMA ESEGLTPQEL INAKPVAAAI KEFFGSSQLS QFMDQNNPLS EVTHKRRLSA LGPGGLTRER AGFEVRDVHL SHYGCLCTIE TPEGPNIGLI NSLAVFARTN QYGFLETPYR KVVEGRVTDE VEYLSAIEEN QYVIAQANTL TDDNGQLTES FVPCRFQGES LLKPPSYVHY MDVSPMQTVS VAAALVPFLE HDDANRALMG ANMQRQAVPT LRAQKPLVGT GIERTVALDS GVTVNARRGG VIDQVDAGRI VVKVNESEII GATDAGVDIY GLIKYTRSNQ NTCINQRPLV NVGDIIASGD VLADGPSTDI GELALGQNML IAFMPWNGYN FEDSILLSER VVEEDRYTTI HIEELTCIAR DTKLGSEEIS ADIPNVSEQA LNRLDESGVV YIGAEVRAGD ILVGKVTPKG ESQLTPEEKL LRAIFGEKAS DVKDSSLRVP PGMDGTVIDV QVFTRDGIEK DKRAHQIEEY EIKRVKKDFD DQFRILEGAI YARLRSQIVG KVVNSGVDIK KGEVITGPYL DGLKKSDWFA LRMKDEVAVE AIDRAQKQIQ AYQKEFDQRF SDKRSKITQG DDLAPGVLKM VKVFLAVKRC IQCGDKMAGR HGNKGVISNI VPVEDMPFME DGTPVDIVLN PLGVPSRMNI GQILEVHLGW AAKGLGHRIQ RMLEANAAIA DLRKFLNEIY NHDKSLVGER VDLSQFSDDE LLNMAKNLTD GVPMASPVFD GASEQEIKRM LDLAELPTGG QTQLYDGHTG EPFDRKTTVG YMHYLKLNHL VDDKMHARST GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL EAYGAAYTLQ EMLTVKSDDV QGRNQMYKNI VDGDHQMVAG MPESFNVLVK EIRSLAINIE LEDN
|
| |