Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_2176 |
Symbol | |
ID | 6120147 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | + |
Start bp | 2285120 |
End bp | 2288518 |
Gene Length | 3399 bp |
Protein Length | 1132 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641650114 |
Product | ribonuclease E |
Protein accession | YP_001776659 |
Protein GI | 170731226 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCGAA TGTTAATCAA TGCTACACAG GCTGAAGAGC TTCGCGTAGC AATCGTGGAT GGCCAGAGCC TGTACGACAT CGATATTGAG CAACCATCTA AAGAGCAAAA AAAATCCAAC ATCTATAAAG GCCGTATCAC CCGGCTGGAA CCGTCTCTCG AAGCCGCGTT TGTTGATTAC GGCACAGATC GCCACGGCTT TTTGCCGTTA AAAGAAATCT CCAAAGACTA CTTCCAAGCC AGTCTGGACC ATCACAAAGC TGGTATCCGA GAGTTATTAC GCGAGGGTCA AGAGATTGTC GTTCAGGTTG ATAAAGAAGA ACGTGGCAAC AAAGGAGCCG CCCTGACCAC GTTCATTTCA CTGGCCGGTC GCTACATGGT GTTGATGCCA AACTCGCCAT CAGCAGGCGG AGTCTCACGT CGCATTGAAG GCGAAGATCG CGCTGCGCTG AAAGAAGCAC TGGAAAAACT GAACATTCCC AACGATATGG GAGTGATCAT CCGCACTGCT GGCGTGGGCC GTGACACTCA AGAGCTACAA TGGGATCTGG ATTTTTTACT GCACGCTTGG CGCGCCATTG CCGAAGCTGC ATTGAGCAAG CCTGCTCCAT TGCTCATCTA CCAAGAATCG CGCCTCATCA TCCGCGCCCT ACGCGACTAT TTCCGTGCTG ACATCGGCGA AATTTTAGTC GACACAGAGG AAATGTATCA GGACGCCCAC GAATTTATGC GGCACGTGAT GCCGCAAAGC CTTCGCAAGC TCAAATACTA CAAAGACGAC ATCCCTCTGT TCAATCGCTT CCAGATCGAA TCGCAGATCG AAGGTGCCTA CGAACGTAAC GTACGCCTCC CCTCCGGCGG CTCCATTGTG GTTGATCAAA CAGAAGCGCT CACTGCCATT GATGTCAACT CTTCACGAGC TACAAAGGGT AACGACATTG AGGAAACCGC ATTCCAAACC AACCTGGAAG CAGCCGATGA AATCGCACGC CAACTGCGCC TACGCGATGT AGGTGGGTTA GTAGTGATTG ACTTCATTGA TATGTCCTCT TCAAAACACC AACGTGAGAT CGAAACCCGT CTACAAAACT GTCTCAAATA CGACCGTGCA CGCGTGCAGC TTAGCCGCAT CTCGCGCTTC GGCCTGTTGG AGATGAGTCG TCAACGCCTA CGCCCAAGCC TCGGCGAATC CAGCCAAATC GTTTGCCCAT ACTGCGACGG ACACGGGCGG ATGCGCAGCA TCGAATCGCT ATCACTGTCG ATCATCCGTA TAGTCGAAGA ACACGCGATG AAGGAAAACA CTGGACAGGT GCTTGTCCAG ACACCAGTAG AGATAGCCAA CTACCTGCTC AACGAGAAGC GCCGTGCAAT TAATGAGATC GAGAAACGCC ATGACGCACC GATCATCATC ATCGCTGACG AGCAATTACA TGCCCCGCAC TACGAGGTGA CTCGTCTACG TGAGAACGAA TTAAGCGAGG AAACAGGCAA ACCAAGTTAC CAACGCAACA CCCCACGCAA GCTACCGGTA CATGCACTCA CCAAATCGCA ACTTAACATC CCGCCAGCAC CAGCAGTGAA ATCGATCACC CCACCGCAAC TGGCACCAAC TCAAGAAAAG ATACCAACAA TCCGAGAGCA ATCCGCTGAG AACCGAGCAC ACCCTATTCC GGAACTTGTA TCCAGCCTAG CGAGTTGGCT AAAACGTATC TTTGGAAATA CTGACAAGCG ACAGACCGCA AGTAACAGCT CGCATCCTGC CCCCCTGCAA CAGAACCGCA ATGGCAATGT GCAACGCAAC GAACGCAACC GCCGTGATGG CCGAATCGCT ACTAGCAACA CCCAACCACA GCAGCAAAGC AGCAGCCACC GCGACAATTA TCGCCATAAC GAAAGCAACA ACTATCCGCA AATCCAGAAC CAATGCACAG CAGACACAAA CGGGAAATTG CGGAACGAAT CACAAACACC CAAATCGTCA GCATATGTGT CGAAACTACC CCAGATGCCA AGGCAACCCC AACCACAGCT CCCAAAAACA CCAAGGACGC AATCGCAACC GACACAAAAC AGCACGAAAA CGATATTAGA CAAACAGCCT GGACCTGTAC TCTATGGTGA AGACAACACG CTACAGAAAG CAAAACCGAT CCCGTTAACT GCGGAAGCGG TGCTTACTAA CATCCCTGCG CCTAGCATGA CAGACAAACC GTCAGGTAAA GACCAGAATG CTTTACCAAC AACATCGAAC GTGACTCAAG ACACATCAAA CGCGCTGATC GAAGCCAAAT CAACCACAAA GACGAACATT GATACGAATA CTGACATTGA ACCGCAACAA AACAATCATG AAGGTACTGC GAACAACGAC GGCAGCAACC GGCGGCGTCG TGGTCGTCGT GGTGGTCGTC GTCGTCGTCG GAATACTTCT CTCAGTAACG AAACCAATGC TGTAAGCGAA AGCAATAGCA TCAAACTATC CAACGACACT GAAACCGACA ATGCGGACAA TATCGAATCA CCCCAAGCCT TGCGCCCTGC CATGCAGGAA AACAAGCGCC AACCGGAGTT TGAGTTCGAT GACCTAGCAC CCGCAGCTCC GATCACCGCA CCGTTACGTA AGGCAATAGC TGCTGAGAGA GAGGGGATAT CCGCTGATCT CACAACTACA GCGCCTCAGA GCATAATGGA AACCGCGTCC CGAACGCATA TCGCCTCGCA AATGGCTCCC CAAAGTGAAA CCAGTGCTGC GTCAACCACG TCTCATACCT CTGTACAAGC TACTGCGACT CATACGCATA AAGATGTCGT TTCTGATTCC CCGTCAAGAA CACCTTACAA GGCTCACTCC AACACCACCA GACACAGTTC GGGGCGTCGT CTGGAAACTC TCTCTACGGC ACATCCCCCT GCCAAGGCAC CTCCATCAGA GCATATAACA CCAACATCAC GCTCAAACGC GAATGCTAAA ACCACAAAGA CAGAGATACC AAACAAACAA ACCAACGCGA ACAGCGATAC GGCAACTCGC CCAACAGCCA CTGATGTGCT GGTTGTAACA AATCAACCAG TGATAGCAAC CAAGCCTTCA ACAACGATAG AAAAAGCACA AACCAAAGTT ATTCCCTCCA CCACATACAA TAATGAACAC ATCGAAACGA AGCGAAAGAT CATTGCAACG GAATCCGAAA CAACCCAACC ACCAGTACGA AAGCCACGCT TGCCGATGCA AAATCCACTA CCCAAGGTAG TCGCTCCACT AGAAGACAAG AAGCAAGCCC CATTCGTGGA AAATACAACC CAACGTAATA TTAATAACGC GACCACAACA TCGCAGAACG ACAAATCATT AGATTTTACA AAAAACAACG AAGAAAATAG TGACAACAAT ACACTATGA
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Protein sequence | MKRMLINATQ AEELRVAIVD GQSLYDIDIE QPSKEQKKSN IYKGRITRLE PSLEAAFVDY GTDRHGFLPL KEISKDYFQA SLDHHKAGIR ELLREGQEIV VQVDKEERGN KGAALTTFIS LAGRYMVLMP NSPSAGGVSR RIEGEDRAAL KEALEKLNIP NDMGVIIRTA GVGRDTQELQ WDLDFLLHAW RAIAEAALSK PAPLLIYQES RLIIRALRDY FRADIGEILV DTEEMYQDAH EFMRHVMPQS LRKLKYYKDD IPLFNRFQIE SQIEGAYERN VRLPSGGSIV VDQTEALTAI DVNSSRATKG NDIEETAFQT NLEAADEIAR QLRLRDVGGL VVIDFIDMSS SKHQREIETR LQNCLKYDRA RVQLSRISRF GLLEMSRQRL RPSLGESSQI VCPYCDGHGR MRSIESLSLS IIRIVEEHAM KENTGQVLVQ TPVEIANYLL NEKRRAINEI EKRHDAPIII IADEQLHAPH YEVTRLRENE LSEETGKPSY QRNTPRKLPV HALTKSQLNI PPAPAVKSIT PPQLAPTQEK IPTIREQSAE NRAHPIPELV SSLASWLKRI FGNTDKRQTA SNSSHPAPLQ QNRNGNVQRN ERNRRDGRIA TSNTQPQQQS SSHRDNYRHN ESNNYPQIQN QCTADTNGKL RNESQTPKSS AYVSKLPQMP RQPQPQLPKT PRTQSQPTQN STKTILDKQP GPVLYGEDNT LQKAKPIPLT AEAVLTNIPA PSMTDKPSGK DQNALPTTSN VTQDTSNALI EAKSTTKTNI DTNTDIEPQQ NNHEGTANND GSNRRRRGRR GGRRRRRNTS LSNETNAVSE SNSIKLSNDT ETDNADNIES PQALRPAMQE NKRQPEFEFD DLAPAAPITA PLRKAIAAER EGISADLTTT APQSIMETAS RTHIASQMAP QSETSAASTT SHTSVQATAT HTHKDVVSDS PSRTPYKAHS NTTRHSSGRR LETLSTAHPP AKAPPSEHIT PTSRSNANAK TTKTEIPNKQ TNANSDTATR PTATDVLVVT NQPVIATKPS TTIEKAQTKV IPSTTYNNEH IETKRKIIAT ESETTQPPVR KPRLPMQNPL PKVVAPLEDK KQAPFVENTT QRNINNATTT SQNDKSLDFT KNNEENSDNN TL
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