Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_2175 |
Symbol | |
ID | 6120146 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | - |
Start bp | 2283728 |
End bp | 2284720 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641650113 |
Product | pseudouridylate synthase |
Protein accession | YP_001776658 |
Protein GI | 170731225 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGATC CATTTCGTTC CCAGTCAGAG TCTGTCGTGG AGTGTTTCAG CGTACGTATC GTTGTCGTGC CTGCCGAGCA CAGTGGGCAG CGCTTGGATA ATTTTCTTCT CAGCAAACTA AAGGGTGTCC CGCGCAGCTT GATTTACAAG CTGGTGCGCA GTGGGCAAGT CAGAGTGAAT GGTGGTCGTG TCAAGGCCGA GCGCAAATTG GATGGGGGTG ACGAAGTCCG ACTTCCGCCG CTACGTCTTA TTCAGGATCG GGCGATTGTC GCGCCATCGG CTGCATTTCT GGCCAGGATG GAGGCGGCGA TTGTGTTCGA GGACGCGCGT TTGTTGGCGT TGAACAAACC CAGTGGTATG GCTAGCCATG GCGGCAGTGG GGTCAGTTAC GGCGTGATTG AGGCTATGCG TATATTGCGT CCTAAGCAGG AACTGGAACT TGTACATCGT TTGGATCGTG ATACCTCTGG TTTGTTGATC ATGGCAAAAA AGCGTGCAGC TCTCATTGAG TTGCAGGCAT TGATGCGCGA AGCCAGCGTG AATGGTAAGG AGGGGCGTGG TATTGCCAAG CGCTATTTGA CTCTGTTATC AGGGCGTATG CCCAATGGAG TGATGAGTGT TGATGCGCCG TTGCATATTA ATTTGCGCCA TGGGGGAGAG CGTCATGTCC GGGTGCATCA TGATGGGAAG CCTTCAAAGA GTCGTTTCCG TTTGCTAGAG CGGCGTGGAG GGCAATCGTA TTGCGAGGTG TTGATCGAAA CTGGTCGAAC TCATCAGATT CGTGTGCATG CACAGCATCT CGGTCATCCA GTTACTGGGG ACGACAAGTA CGGTGATCAG GAAGTCAACC GGAAGTTGCG CGATCAGATT GGTTTACAGC GTCTTTTCTT ACATGCTGTG TCGTTGGAGT TTGCTTTGGA TGCTGGAAGT ACGCCCTATG TGTTGAATGC TCCATTGGCG GAGGACTTGG TGGCCGCCTT AGACCGTCTT TAG
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Protein sequence | MTDPFRSQSE SVVECFSVRI VVVPAEHSGQ RLDNFLLSKL KGVPRSLIYK LVRSGQVRVN GGRVKAERKL DGGDEVRLPP LRLIQDRAIV APSAAFLARM EAAIVFEDAR LLALNKPSGM ASHGGSGVSY GVIEAMRILR PKQELELVHR LDRDTSGLLI MAKKRAALIE LQALMREASV NGKEGRGIAK RYLTLLSGRM PNGVMSVDAP LHINLRHGGE RHVRVHHDGK PSKSRFRLLE RRGGQSYCEV LIETGRTHQI RVHAQHLGHP VTGDDKYGDQ EVNRKLRDQI GLQRLFLHAV SLEFALDAGS TPYVLNAPLA EDLVAALDRL
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