| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_2046 |
|---|
| Symbol | ddl |
|---|
| ID | 6120249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 2145285 |
|---|
| End bp | 2146247 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641649994 |
|---|
| Product | D-alanine--D-alanine ligase |
|---|
| Protein accession | YP_001776542 |
|---|
| Protein GI | 170731109 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0000802497 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTATGA GCATATTTTC ACTGTTTCCA CGGTATACGG ATCCGGCGGT GTTTGGTCGT
GTTGCAGTGT TATTAGGGGG GACGTCTGCT GAGCGTGAGG TGTCTTTGCT TTCAGGTCGT
AATGTGTTGG AAGTATTGCG CATGCGCGGT GTTGATGCTC AGTCGGTAGA TGGGGTTCCG
GCACTCGCTC AGGCGCTGGT GGAACGGCGT TTTGATCGTG TGTTCAATGT GTTGCACGGC
CATAATGGCG GTGGTGAGGA TGGTGTGGTG CAGGGGTTGA TGCAGGCTTT TGGTGTGCCG
TATACAGGTT CGGATGTGCT TGCTTCAGCG TTGAGTATGG ATAAGGTGCG CACTAAACAG
GTTTGGCTTG CGCTGGGTTT GCCGACGCCG CGTTATGCGA GTTTGAGTGT GTGTGCCACT
GCTGTTGAGG TGCGTAAGGC GGTTGAGATG CTAGGTTTTC CGGTGATTAT TAAGCCGGCC
AAAGAAGGGT CTAGTGTTGG TGTCAGTCGT GTGTTTGCGC TGGAGCATTT GGAGGAGGCG
GTTGCTTTAG CGGCGCGTTA CGAGGGTGAG TTGCTGATGG AGCAGTTGAT CGAAGGGGAT
GAATTGACGG TGTCGATTCT TGATGAGATG GCGTTGCCCT CAATTCGGAT CGTTCCTCAG
GGGCAGTGGT ATGACTATAA CGCGAAGTAT CTTGCTGAAG ACACGCAGTA TGTGTGCCCG
GGTTTGGATG ATGTTGCTGA GGCTGAAATC GCTCAACTTG CGTTGGCTGC ATTCCATGGT
GTTGGTTGTC GTGGTTGGGG TCGTGTGGAT GTGATGCGCG AGCGCAGCAG TGGGCGCTTT
TTCTTATTGG AAGTCAATAC TGCTCCTGGG ATGACGACTC ACTCGTTAGT GCCGAAGGCA
GCGAGTCAGT TGGGTATGGG TTTTGATGAT TTGGTGTGGC GGATTCTGGA GCAGACTTTA
TGA
|
|---|
| Protein sequence | MGMSIFSLFP RYTDPAVFGR VAVLLGGTSA EREVSLLSGR NVLEVLRMRG VDAQSVDGVP
ALAQALVERR FDRVFNVLHG HNGGGEDGVV QGLMQAFGVP YTGSDVLASA LSMDKVRTKQ
VWLALGLPTP RYASLSVCAT AVEVRKAVEM LGFPVIIKPA KEGSSVGVSR VFALEHLEEA
VALAARYEGE LLMEQLIEGD ELTVSILDEM ALPSIRIVPQ GQWYDYNAKY LAEDTQYVCP
GLDDVAEAEI AQLALAAFHG VGCRGWGRVD VMRERSSGRF FLLEVNTAPG MTTHSLVPKA
ASQLGMGFDD LVWRILEQTL
|
|---|
| |