| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_2010 |
|---|
| Symbol | pdxA |
|---|
| ID | 6121094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 2101433 |
|---|
| End bp | 2102425 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641649961 |
|---|
| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| Protein accession | YP_001776509 |
|---|
| Protein GI | 170731076 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCACC CCGCGCTTGC TTTGGTTCCT GGCGAACCGG CGGGCGTTGG CCCTGAATTG
TGCGTGCGGT TGGTACAACA ACCGCGTCAG GATTGCCGAC TTGTTGCCTT CGCCGATCCA
GCCACCTTAC AGGCTGCTGC CGCTGCACTA GATTTGCCGC TGCGTTTGCT TCCGCCCGAA
GCACTCCCTG AGCGTCCTGG TGATCTGCCT ATACAGGCCC ATTGCCACGT TCATCCGACG
CGTTTTGGTC ACCCAGACCC TGCCAATGCT CCTGCGGTGA TTGCTGCACT CTGTGAGGCG
GCAAGCCACT GCGTACATGG AGTGCTGCAT GGCATCGTCA CTGGCCCGGT ACACAAGGCC
GTTATCAATC AGAGCGGCAT CCATTACACC GGCACGACAG AATTGCTGGC CGCGCAGGCA
GAGTGCGACG TAGTCATGAT GTTGGCTAAT CCGCATCTGC GCGTGGCCCT GGTCACCACC
CATCTGCCGT TGCGTGATGT GCCGGACGCC ATCACTGCTG CACTGTTAGA GCGGTGCTTA
CGGATTGTTA ATACCGCGAT GTGCGGTGAC TTTGGCATCG CAACCCCTCG CATTGCCGTC
CTTGGATTAA ATCCGCATGC GGGTGAAGAG GGTTATCTTG GTCGCGAAGA ACTGGATGTT
GTCATCCCCG TGTTGCAGCG TTTGCGTGCC GAAGGCATGG TTTTGCTGGG GCCACTGTCT
GCGGATACGG CGTTCTTGCC AACCAAATTG ATTGGCTATG ATGCAGTGGT GGCGATGTAT
CACGACCAAG GGTTGCCAGT ACTCAAACAC AGCGGATTTG AACAGGCGGT CAATATCACC
TTGGGCCTTC CCTATCCGCG TGTCGCTGTG GACCACGGCA CCGCCCTTGA CCTTGCTGGC
CGTGGCGTTG CTGATCCTTC TAGTCTCTTT GCAGCCACTG CGCTATGTGC CCGGCTAGCT
GCGTCGCGCG CCTTGCTGTC CGTACGTTCC TGA
|
|---|
| Protein sequence | MLHPALALVP GEPAGVGPEL CVRLVQQPRQ DCRLVAFADP ATLQAAAAAL DLPLRLLPPE
ALPERPGDLP IQAHCHVHPT RFGHPDPANA PAVIAALCEA ASHCVHGVLH GIVTGPVHKA
VINQSGIHYT GTTELLAAQA ECDVVMMLAN PHLRVALVTT HLPLRDVPDA ITAALLERCL
RIVNTAMCGD FGIATPRIAV LGLNPHAGEE GYLGREELDV VIPVLQRLRA EGMVLLGPLS
ADTAFLPTKL IGYDAVVAMY HDQGLPVLKH SGFEQAVNIT LGLPYPRVAV DHGTALDLAG
RGVADPSSLF AATALCARLA ASRALLSVRS
|
|---|
| |