| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_2000 |
|---|
| Symbol | |
|---|
| ID | 6121084 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 2083348 |
|---|
| End bp | 2084655 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641649952 |
|---|
| Product | D-amino acid dehydrogenase small subunit |
|---|
| Protein accession | YP_001776500 |
|---|
| Protein GI | 170731067 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.881788 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTGC TCATTTTGGG AAGCGGCGTG ATCGGTACCA CCAGTGCCTG GTATCTGTCC
AAGGCTGGTT GTGAGGTAGT GGTGGTGGAT CGTCAGTCTG GTGCTGGTCT GGAGACCAGT
TATGCCAATG GTGGTCAGCT GTCTTTTGGT TATACCTCGC CCTGGGCGGC CCCCGGTGTT
CCGTTGAAGG CTGTGAGGTG GTTGTTTGAG CGGCATGCGC CGCTGTCGAT TCGTCCGACG
ACTGATTGGA ATCAGTATGT TTGGTTGGCA CGGATGTTGC GTCATTGCTC TGCTGAGCGC
TATGCAGTGA ATAAGTCGCG GATGTTGCGT CTCAGTGAGT ACAGTCGTGA AGCGTTGGAG
GCGTTATCTG CTGAAACTGG GATCACGTTC GAGGGGCGCC GTTTAGGGAC TATTCAGTTA
TTTCGGACGC AGCAGCAGCT TGATGCGGCT GTTCGGGATA TCGAACTACT CACTCAGTAC
GGTATTCCAT ACGAGGTGCT CAGTCCGCAT CAGCTTGCTA AGTTTGAGCC TGGTTTGGTC
GATGGTAGCG TCCGTTTTGC GGGTGCGCTG CGCTTGCCTC ATGATCAGAC TGGGGATTGT
TATTTGTTCA CGCAACGGTT GGCTGCGTTG GCGGCTAAGC GTGGGGTTGA GTTCCGTTAC
GGTTGTAAGG TGCAACGCTT GGAAGTGGAT GGTCCTCGTG TGACGGGAGC TTGGATCAAT
GGAGCGTTGG AGCGTGCCGA TTGTTGTGTG GTTGCGCTCG GTAGTTATTC GCCGCTGTTA
TTGGCGCCGT TGGGCCTGCG TTTGCCAGTG TATCCGTTGA AAGGGTTTTC GTTGACGTTG
CCGATGATTG ATGCGTCGCG TGCGCCCGTT TCGACGGTGC TTGACGAAAG TTACAAGGTT
GCGGTTACTC GTTTCGATGA ACGTATCCGT GTGGCGGGTA TGGCAGAGGT CTCTGGTTAC
GATGTGTCGT TGAATCCACG TCGCCGTGCG ACGTTGGAGA TGGTGGTGCA GGATGTGTAC
CCTGGGTGCG GTGATTTGGG GCGTGGCGAG TTTTGGACTG GGCTGCGTCC GGCGACGCCG
GATGGGACGC CGGTGATCGG TGCGACGCCC TATCAGGGTT TGTTTCTTAA TACGGGGCAC
GGCACGCTTG GTTGGACGAT GTCATCCGGT TCAGGCCGTT ATTTAGCCGA TTTGATATGT
TGTCGCCCTT GTGAAATCTC CAGTGAAGGG TTGGATATGT TCCGTTACTT GGTGTCGACG
ATACCTTGCC CGCAAGAGTG TGCTCCGTGC GTCCCGCCCA CGCCGTAA
|
|---|
| Protein sequence | MRVLILGSGV IGTTSAWYLS KAGCEVVVVD RQSGAGLETS YANGGQLSFG YTSPWAAPGV
PLKAVRWLFE RHAPLSIRPT TDWNQYVWLA RMLRHCSAER YAVNKSRMLR LSEYSREALE
ALSAETGITF EGRRLGTIQL FRTQQQLDAA VRDIELLTQY GIPYEVLSPH QLAKFEPGLV
DGSVRFAGAL RLPHDQTGDC YLFTQRLAAL AAKRGVEFRY GCKVQRLEVD GPRVTGAWIN
GALERADCCV VALGSYSPLL LAPLGLRLPV YPLKGFSLTL PMIDASRAPV STVLDESYKV
AVTRFDERIR VAGMAEVSGY DVSLNPRRRA TLEMVVQDVY PGCGDLGRGE FWTGLRPATP
DGTPVIGATP YQGLFLNTGH GTLGWTMSSG SGRYLADLIC CRPCEISSEG LDMFRYLVST
IPCPQECAPC VPPTP
|
|---|
| |