| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1975 |
|---|
| Symbol | |
|---|
| ID | 6121058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 2062296 |
|---|
| End bp | 2063003 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641649926 |
|---|
| Product | ABC transporter permease protein |
|---|
| Protein accession | YP_001776475 |
|---|
| Protein GI | 170731042 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2011] ABC-type metal ion transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00271099 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATCC CCATGATCTT CCCCTCAATC GCCGCTTCCG GTTTTTTCGT CAACCTGGAC
GCTGATAAGT GGAAAGACAT CGGTCGCGCC ACACTCGATA CCCTGCTCAT GGTCGGAGGT
GCATTGCCAC CCGCATTGGC GCTTGGTCTT CCCTTGGGAA TCGCACTGTA TTTATGCAAC
ACATCGCAAC TGCGCCGCCA TCCCCAGGTG TACACCCTGC TGGCACTGGC AGTGAATCTA
TTACGCTCGG TGCCCTTTAT CATTTTGATG ATCACAATGA TCCCAGTCAC CTTGCTGATC
ATGGGGACCT CACTAGGCAT CCGTGGTGCA ATCCTGCCGC TAGTCATCGG TGCAGCACCG
TTCTACGCAC GCCTCGTCGA AAGCGCGCTA CGCGAGGTTG ATCGTGGTGT CGTCGAAGCT
GCACAAGCGA TGGGAGCAAC CACCTGGCAA CTCGTCTGGC GGGTCCTGCT ACCAGAAGCA
CGCCCCGGTT TGATTGCTGG TGCCACAATC ACCGCAATCG CCGTGGTCGG CTTTACAGCA
ATGGGCGGCG CAATCGGCTC GGGGGGATTG GGTGACGTCG CCTACCGCGA AGGCTATCTG
CGCTCACACA CAGACGTTGC TCTGGTCACT GTGATTGCAC TGCTCATGGT GGTGCAATTG
ATACAGATGT TTGGTGATTG GTTGGTCGCA CACTACAGCC GACGCTGA
|
|---|
| Protein sequence | MNIPMIFPSI AASGFFVNLD ADKWKDIGRA TLDTLLMVGG ALPPALALGL PLGIALYLCN
TSQLRRHPQV YTLLALAVNL LRSVPFIILM ITMIPVTLLI MGTSLGIRGA ILPLVIGAAP
FYARLVESAL REVDRGVVEA AQAMGATTWQ LVWRVLLPEA RPGLIAGATI TAIAVVGFTA
MGGAIGSGGL GDVAYREGYL RSHTDVALVT VIALLMVVQL IQMFGDWLVA HYSRR
|
|---|
| |