Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_1946 |
Symbol | |
ID | 6120226 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | - |
Start bp | 2023289 |
End bp | 2024182 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641649900 |
Product | soluble lytic murein transglycosylase precursor |
Protein accession | YP_001776449 |
Protein GI | 170731016 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.378225 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAGTC GCTTGCGTAT CGTTGGGGTG TTGTTGACCA TGATAGCGGT GCCTGCTTGG GGGGCGGCGC TCTACAAGTG TTTGAATGTT GACGGTATAC CGAGTTATGT CAGTAAGCGT GTTGCTGGTG CGACGTGTAC GGTTGTGGTT AATCATGTGT ATCGTGTTCC ATCGTTGGCT GTGGCTGTTC CTGCTGCGGT GCCGGTTTCC GGGGCTGTGA AGGATGCTGT GGTTTCAGCA CCCTCGGTTG GTGGTGCTGC AGTGATGTCA GCGCCGGTGC GTCCCGCTGT AGCTGGGGGG GGGAAGCGTT TGGTTAGTGG GCAGGTTTAT TCTTATATTC AGGATGGGGT GCGTCACTAC AGTAGCTCCG CTCCGAGGCA AACGGCCAGT GTGCATGGGT TGCGCACGAT TTCTTATAGT TTCATCGAAA CTTGTTATGC CTGTGCGCCG AATCCTGGGG TCAATTTTGG TTCGGTGCCT TTGAATACGT CTGCTTATCA TGGCGAAATC GTTTCCGCCG CAGGGGAGTT TGGGGTGGAG GAGGCGTTGG TGCGTGCGAT TATTCATGCC GAATCTTCGT ATAACCCTCT TTCGTTGAGT AGCGCCGGTG CGCAGGGGTT GATGCAGTTG ATGCCAGGGA CTGCGCGGCG TTTCGGGGTC ACTGATTCCT ATGATCCGCT GCAAAATATC CGTGGTGGGG TGCAGTATTT GGCTTGGTTG TTGAAGCGAT TTAACGGGAA TTTGACACTA GCAGCGGCTG GATATAATGC CGGTGAGGGT GCGGTTGATC GTTACGGCGG TGTGCCACCG TATAGTGAGA CGCAGCGTTA TGTTGAGCGT GTCAATGTGC TTCTTGGACG GTATCGTGCG GCGTTGATGA GTACACATCA ATGA
|
Protein sequence | MKSRLRIVGV LLTMIAVPAW GAALYKCLNV DGIPSYVSKR VAGATCTVVV NHVYRVPSLA VAVPAAVPVS GAVKDAVVSA PSVGGAAVMS APVRPAVAGG GKRLVSGQVY SYIQDGVRHY SSSAPRQTAS VHGLRTISYS FIETCYACAP NPGVNFGSVP LNTSAYHGEI VSAAGEFGVE EALVRAIIHA ESSYNPLSLS SAGAQGLMQL MPGTARRFGV TDSYDPLQNI RGGVQYLAWL LKRFNGNLTL AAAGYNAGEG AVDRYGGVPP YSETQRYVER VNVLLGRYRA ALMSTHQ
|
| |