Gene Xfasm12_1910 details

Gene Information

• Locus tag: Xfasm12_1910
• Symbol: nrdR
• ID: 6120190
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: -
• Start bp: 1989488
• End bp: 1990033
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 641649867
• Product: transcriptional regulator NrdR
• Protein accession: YP_001776416
• Protein GI: 170730983
• COG category: [K] Transcription
• COG ID: [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
• TIGRFAM ID: [TIGR00244] transcriptional regulator NrdR

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 0.658817
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATTGTC TGTTTTGCCA ACATACCGAT ACCCGAGTGA TTGATTCGCG CGTCTCCGAA 
GACGGTGCGA CAATCCGGCG TCGCCGCGAG TGTGAGGCGT GCGGTGAGCG TTTCAGTACG 
TTGGAAACGA TTGAGTTGAA GTTGCCGGTG ATCATCAAGA AGGATGGCGG GCGTGAGGCA 
TTTGATGGAC GCAAGCTGCG TACCAGTTTT GATCGGGCTC TACAGAAGCG TCCAGTGGCT 
GAGGAGCGCA TTGAGATGGC GATGCGTGCG GTGATCCACC GTCTGCGTAT GGCCGGTGAG 
CGTGAAGTGC CTTCAATCGT GGTGGGTGAA TGTGTTATGG CTGAGTTGCG TAAGCTCGAC 
CATGTGGGCT ATGTGCGTTT TGCTTCGGTC TATCGCAGTT TCCAGGATGT TGCCGATTTC 
CGCGAAGAGA TCGAAAAGCT TGAGAGCGAG TTACTGGTGA GTAGGGAGCA GTTGCCGTTG 
TTGGAAGCAG CAATGGAATC GATGGGACAC CCTTCTATTG ATCAGGGGGG TAAGCACGGT 
GCGTGA 

 

Protein sequence

MYCLFCQHTD TRVIDSRVSE DGATIRRRRE CEACGERFST LETIELKLPV IIKKDGGREA 
FDGRKLRTSF DRALQKRPVA EERIEMAMRA VIHRLRMAGE REVPSIVVGE CVMAELRKLD 
HVGYVRFASV YRSFQDVADF REEIEKLESE LLVSREQLPL LEAAMESMGH PSIDQGGKHG 
A