| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1856 |
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| Symbol | |
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| ID | 6121577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | - |
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| Start bp | 1933885 |
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| End bp | 1935777 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641649820 |
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| Product | fimbrial assembly protein |
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| Protein accession | YP_001776370 |
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| Protein GI | 170730937 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0231369 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGACTT TATTTGAAGT CTTAGGCTTG CGTTTTGTTA GGCGTATAGC CTCGCTTCGC
GTATGTAAAA TTTGGGTATG CATAGCTTTC GCTTGGTGTT GCATCCCAGG AACCGTATCG
GCTGAAAACA AGCAAGCGAT TCCAGTGGCT AAAGCTACCA ATGCTCCACT AAGTGTTTCC
AAAATCGATT TCAAACGTGG TGATGATGGC TCTGGCCGTC TGATTTTGAA GTTTGATGGG
CAGGGGGCCA CTCCTGACCT GCGTACGCAG GGCGGCACCG TGCTGGTTGA CCTGGGGACA
GCTGTGTTGC CGACTGTCTT GCAACGCCAG ATCAACGTTG TTGACTTTGC TACCCCAGTG
CAGCGTATCG ACGCTAAGCC TATGGGTAAG GGTGCACAAC TTGTGTTGAG CACGAAGGGA
GCGTTTGAGT CGCTTGCTTA CCAGACAGGG GATGAATACG TGGTTGAAAT TGTGCCACGC
AAGGGAGAGG TTGCCATGGG TGGGGCGATC ACCCCAGAAT CGGTCAGTAA GTCCGCAGCG
AAGATTTACG CACAAGGGTA CAGTGGTCGT CCAGTAACGT TTAACTTCCA AGACGTTCCA
GTACGAACGG TTTTGCAGTT GATCGCTGAT GAGTCCAACC TCAATATTGT TGCTTCCGAC
ACTGTGCAAG GCAATGTCAC TCTACGTTTG ATTAATGTGC CATGGGATCA AGCGCTCGAC
ATCGTTTTGC GTGCTAAAGG ATTGGATAAG CGCCGTGATG AGAAAGTAAT TTGGGTTGCG
CCGCAACAGG AGCTTGCTAA ATACGAGCAA GAAAAAGAGG ACGCGCGGAT CGCGATCGAA
AATCGTGAGG GGTTAATTAC CGATTATGTC CAAATAAATT ATCATTCGGC CACGGTCATT
TTTAAGGCGC TGACAGAAGC CAAAGGTATG GGGGGGGGAG GTAACGGTAC ACCTAATAAT
AATAGTGATG ATGCTTTCTT ATCGCCACGT GGTCGGCTTG TGGCTGATGA GCGCACTAAT
ACGTTGATGA TTAGTGATAT TCCCAAGAAA GTCGCGCAAA TGCGTACTCT CATCCAGCAT
ATTGATCGTC CTGTGGACCA AGTGTTGATT GAGGGCCGCA TCGTGATCGC CACCGATAGC
TTCGCGCGTG ATTTGGGGGC CAAGTTCGGT GTTGGTGCTG CTAGCCGTTT CAGCGATAAC
ACTGCAACGA TCGGTAGTAA CGTCACTACT GCTGATAGCT CCACATCGGC TACGCGGGGG
CTTAATGTTG ACTTGGGCGG TCCGACCAAC ACCACTGCTT CAGTTCTTCC GAGTTTAGCC
TACACTTTGC TTGGACCTAA ATTTAATCTA GATCTTGAGC TTTCGGCATT GCAGCAGGAA
TCCCGTGGCG AGGTGATTTC AAACCCTCGT ATTGTCACTG CAAACCAGCG TGAGGGATAT
ATCAAACAAG GTAAGGAAAT TGGGTATGTC ACGATCACTG GAGGAGTCGC TGGTGGTCAA
GCCACTCCGA ATGTCCAATT TAAAGAGGCT GTTTTGGAGT TGCGTGTGAC CCCAACGATC
ACCAATGACA ACCGTGTGTT TCTCAACATG ACTGTCAAGA AGGACGAGAT CGATCAAATG
ATTACGATCG CCAATTTTGG TACCGTGCCG ACCTTGAACA AGCGTGAGAT CAACACTGCC
GTATTGGTTG ATGATGGTCA AACTGTTGTT ATCGGTGGTG TATATGAGTT TTCCGACCGT
AATAGTGTGA GTAAGGTTCC GTTCTTAGGG GATGTGCCTT TCCTTGGTAA TTTGTTTAAG
AAACGTGGTA AAGATAAACA AAAGGCCGAG CTTTTGATTT TCGTCACTCC TAAGGTGTTG
CGTGTGGCTA ATGCTACTGC TGCAGTGCAT TGA
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| Protein sequence | MMTLFEVLGL RFVRRIASLR VCKIWVCIAF AWCCIPGTVS AENKQAIPVA KATNAPLSVS
KIDFKRGDDG SGRLILKFDG QGATPDLRTQ GGTVLVDLGT AVLPTVLQRQ INVVDFATPV
QRIDAKPMGK GAQLVLSTKG AFESLAYQTG DEYVVEIVPR KGEVAMGGAI TPESVSKSAA
KIYAQGYSGR PVTFNFQDVP VRTVLQLIAD ESNLNIVASD TVQGNVTLRL INVPWDQALD
IVLRAKGLDK RRDEKVIWVA PQQELAKYEQ EKEDARIAIE NREGLITDYV QINYHSATVI
FKALTEAKGM GGGGNGTPNN NSDDAFLSPR GRLVADERTN TLMISDIPKK VAQMRTLIQH
IDRPVDQVLI EGRIVIATDS FARDLGAKFG VGAASRFSDN TATIGSNVTT ADSSTSATRG
LNVDLGGPTN TTASVLPSLA YTLLGPKFNL DLELSALQQE SRGEVISNPR IVTANQREGY
IKQGKEIGYV TITGGVAGGQ ATPNVQFKEA VLELRVTPTI TNDNRVFLNM TVKKDEIDQM
ITIANFGTVP TLNKREINTA VLVDDGQTVV IGGVYEFSDR NSVSKVPFLG DVPFLGNLFK
KRGKDKQKAE LLIFVTPKVL RVANATAAVH
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