| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1767 |
|---|
| Symbol | |
|---|
| ID | 6121005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 1833984 |
|---|
| End bp | 1835240 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641649739 |
|---|
| Product | type IV pilus assembly protein PilW |
|---|
| Protein accession | YP_001776291 |
|---|
| Protein GI | 170730858 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4966] Tfp pilus assembly protein PilW |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.846676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATGT ATTCCTCACG CTTAGCGCGT CTTCGCATCA GTGGACTTTC GTTGATGGAA
CTGCTGATCG CACTGTTGAT TGGTTCCATA CTCATTGTGG GGGTGATCCA GGTATTTCTT
GCGTCATGGA CTGCTTACCG TCTTTCCCAA GGGATCGCGC GTAATCAGGA AAGCGGTCGT
TTCGCACTGG ATTTTCTGAC ACGGGATATC CGCATGGCTG GTCATACCGG ATGTATCAAT
GATCAAGCGC TGTTGTCTGT TGATGATGGC GGACACCCGA ATGGAGGAAA TATCCGTTCG
TTGTTTCTCA ATGCGGATGA TCGCAATACC AACAATGTTT CTAATCAGCC ATTCCCGCTG
CGTTTCGATA TTGCGATTGA GGGATTTGAT GCCTCTGGCA CAGGAAGAGG TAGCCTGCTG
TCGCTTGGTG CTGTCCCTGT CGTCGGTAGT GCGTCTGATT GGAATCCAGT GTTGCCGGCT
GAACTTGCGG CTCTGAAACC GATCAAGGGA AGTGATGTTC TGGTACTGCG TTATCTTTCC
GCTGAGGAAA ACATAGTGAC GGATTTCAAT CCAACGTCCA GTCCTACCAT CATTTATACA
GATGAGTCGG TTCATGGGAG CAGTAAAGTC GCGACCGGTG GCAGTGGCCT GTATGCGATT
GCCGATTGTA ATGGGGCCAG TGTCTTCCAG GCGAGTACTG CGCCGACGAT GACCAGTATG
AATGTCAGTG CTGGCGGTCT GAATAAGACG GCGCTTGATT TCGTCGGTTA TTACGATCGT
TCGCTGTCGT TTTTCCCAGA GAGTTTGGCG TTGTTTCGTG CCGAATCGAT TGCTTATTAC
ATTGGTTTGA ACGAGCGCGG GATTCCATCA CTGTATCGTG CCCGTTGGAC TTCGGCGCCT
GCGGCGGTTG CGTTGGTTAC CAATGTTCAG GAGTTGGTTG AGGGAGTGGA GTCCTTGCAA
TTTCTTTATG GTGAAGATTC GGCAGTGTTG GGCAAAACGA TATCAAGTGG CTATATCGAT
CATACGAATC CAGCAAACAT CATCGGTGAT GTGGATAACG CGCTGCGTTG GCGTCGGATT
GGTACGGTGC AGATCGGGCT GTTGGTGCGT GGTGCTGGGC AAGAACGGGC CAATTCTCTG
AATCCGGTAG TGAATCCGAC GGTGCTATCG GTACATATCA ATCCGCCATC GGATGGTCAA
TACCGGGCGG TGTACGAGAC AACCGTCGCT TTACGCAATC GCTTATACGG GAACTGA
|
|---|
| Protein sequence | MTMYSSRLAR LRISGLSLME LLIALLIGSI LIVGVIQVFL ASWTAYRLSQ GIARNQESGR
FALDFLTRDI RMAGHTGCIN DQALLSVDDG GHPNGGNIRS LFLNADDRNT NNVSNQPFPL
RFDIAIEGFD ASGTGRGSLL SLGAVPVVGS ASDWNPVLPA ELAALKPIKG SDVLVLRYLS
AEENIVTDFN PTSSPTIIYT DESVHGSSKV ATGGSGLYAI ADCNGASVFQ ASTAPTMTSM
NVSAGGLNKT ALDFVGYYDR SLSFFPESLA LFRAESIAYY IGLNERGIPS LYRARWTSAP
AAVALVTNVQ ELVEGVESLQ FLYGEDSAVL GKTISSGYID HTNPANIIGD VDNALRWRRI
GTVQIGLLVR GAGQERANSL NPVVNPTVLS VHINPPSDGQ YRAVYETTVA LRNRLYGN
|
|---|
| |