Gene Xfasm12_1726 details

Gene Information

• Locus tag: Xfasm12_1726
• Symbol: tmk
• ID: 6120963
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: -
• Start bp: 1794857
• End bp: 1795510
• Gene Length: 654 bp
• Protein Length: 217 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 641649703
• Product: thymidylate kinase
• Protein accession: YP_001776256
• Protein GI: 170730823
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0125] Thymidylate kinase
• TIGRFAM ID: [TIGR00041] thymidylate kinase

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCACGATC AGATCATTCC ATGTGGGATG CTCGTCGCCA TCGAGGGGAT TGATGGTGCC 
GGAAAGACCA CGTTAGCTCG GAGTTTGGCG CTTAAGTTAC GGGGTGTCGG GTTGGAAACG 
GTGGTCAGTA AGGAGCCGAC CAACGGGCCA TGGGGCACGC TGTTGCGGCA GTCTGCTGCG 
ACCGGGCGTT TTTCCCCCGA GGAGGAGGTT GATGTGTTGT TGCGTGATCG TCGCCAGCAT 
GTTGAAGATC TTATTGTTCC GATGATCGGC CGTGGTGCGG TGGTGATCTT GGACCGCTAT 
TTCCCGTCGA TGGTGGCTTA TCAGGGCGCT GCCGGGTTAC CAGTGGATGC TTTGCTTGAG 
GCCAATGCGT TTGCTCCACG TCCGGATGTT CTGTTGTTGC TGGATGTGCC GCCAGCGATC 
GGTTTGCAGC GTATCTGGGA GCGGGGGAGC ACGCCAAATC ACTTCGAAAC TACGGAAAAT 
CTGTCGCGTT GCCGTGACAT TTTCCTAGCA TTGGAACTGC CATCTAAACG GGTGATTGAT 
GCAACGGCCA ATGCTGAAAC GGTGTTCTCT GCGGCACTGG GCTTGGTGAT GGAGGTATTG 
CGGGTGCGTC TGGGCGCATT AGGTGCGGTG GTGTTGGAGC GTCTTGCTGG CTAA 

 

Protein sequence

MHDQIIPCGM LVAIEGIDGA GKTTLARSLA LKLRGVGLET VVSKEPTNGP WGTLLRQSAA 
TGRFSPEEEV DVLLRDRRQH VEDLIVPMIG RGAVVILDRY FPSMVAYQGA AGLPVDALLE 
ANAFAPRPDV LLLLDVPPAI GLQRIWERGS TPNHFETTEN LSRCRDIFLA LELPSKRVID 
ATANAETVFS AALGLVMEVL RVRLGALGAV VLERLAG