| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1679 |
|---|
| Symbol | |
|---|
| ID | 6121639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 1748861 |
|---|
| End bp | 1750093 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641649662 |
|---|
| Product | phage-related integrase |
|---|
| Protein accession | YP_001776215 |
|---|
| Protein GI | 170730782 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCTAAGC TGACGAAGAA CTACATCGAC AAGATCACCG CGCCCGCTGA CAAGGAGGCG
TTCCACTGGG ATGACTCGCT CAAGGGGTTC GGCCTCCGGG TCACCCCTAC CGGCAAGATC
ACCTACATCG TGCAGGGGCG CGTCAATGGC AGTTCGCCCC GCATCAGCAT CGGCCCGCAT
GGGGTCTTCA CTGTCGATCA AGCCCGTGAT GTTGCCCGCG AACATCTGCG CAGCATGCGC
ATGGGCATCG ACCTGCGCGC CGTCGCCAAG AAGGAAGCCG CCCAGCGCGT CACCCTCCGC
GACGTGGCCG ACGGGTACAA GCGCGACCGT CCGCTGAAGG ACAGCAGCAA GGCCGAGATT
GAACGCCATG TGACCACAAC CTTTGAGGCA TGGCTCAAGA AGCCGCTCAA GGACATCAAC
CGCGAGGCGG TCACGAAGCG ATTCAACGAG ATCAAGACCA AGGGTACGAC GGGCAACGGC
CCAGCACCAG CGCAAGCGAA TCAGGCCTTC GCTGTGCTTC GCGCCTTGTT CAACTACGCC
ATCCGCGAAT ACCGCGAGCC GGACGGGTCG CCCGTGCTGA CGGACAACCC CGTTGATGTG
CTCTACAAGA AGTGGGCACC GCTCAAGCCG CGCACTAGCC GCGTGCCGGA TAGCAAGGTC
GGCGCGGTGT GGTCATTCCT CACCAAAGCC CGTGAGCAGG CATACAACCG TGACACGCTG
GCAAGCATTG ACCTTGTGAT GCTGCTCATG CTGACCGGCC TTCGGATCGG GGAATGCAGC
GAACTGACAT GGGATCGGGT CAATCTTGAG GAAGGCTGGA TTCACATCCC CGACCCGAAG
AACAGCAACC CCGTATGGCT GCCGCTATCC ACGCAGGCGG TGCAGTTGCT GACCACGCGC
CAGCGCGTCA AGGGTAGCCC GTTCGTGTTC TCGTCCTGGG GCAAGGCTGG GCACATCAAA
GACCCGCGCG ACACGATGAA GAAAGTCAGC GAGGTAGCGG GCACGAAGAT CACGCCGCAC
GACCTGCGCC GCACCTACAC GACCATCGGC GTGGCATCAG TGGGCATCGA CTTGCACAAG
GTCGAATTGC TGACGAACCA CGTTCCCAAG GGCGTGACAG CGCGCCACTA CCTTGAGACT
TCGCACCTGC AATATCTCAA GCCGGAGACG CAACGCATAT CTGACTGGAT CGAGCAGCAG
GCAGCAGCCT TAAACGACCG CTCAGAAAGC TAA
|
|---|
| Protein sequence | MPKLTKNYID KITAPADKEA FHWDDSLKGF GLRVTPTGKI TYIVQGRVNG SSPRISIGPH
GVFTVDQARD VAREHLRSMR MGIDLRAVAK KEAAQRVTLR DVADGYKRDR PLKDSSKAEI
ERHVTTTFEA WLKKPLKDIN REAVTKRFNE IKTKGTTGNG PAPAQANQAF AVLRALFNYA
IREYREPDGS PVLTDNPVDV LYKKWAPLKP RTSRVPDSKV GAVWSFLTKA REQAYNRDTL
ASIDLVMLLM LTGLRIGECS ELTWDRVNLE EGWIHIPDPK NSNPVWLPLS TQAVQLLTTR
QRVKGSPFVF SSWGKAGHIK DPRDTMKKVS EVAGTKITPH DLRRTYTTIG VASVGIDLHK
VELLTNHVPK GVTARHYLET SHLQYLKPET QRISDWIEQQ AAALNDRSES
|
|---|
| |