| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1611 |
|---|
| Symbol | |
|---|
| ID | 6119439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 1686362 |
|---|
| End bp | 1687126 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641649595 |
|---|
| Product | putative transcriptional regulator |
|---|
| Protein accession | YP_001776150 |
|---|
| Protein GI | 170730717 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1386] Predicted transcriptional regulator containing the HTH domain |
|---|
| TIGRFAM ID | [TIGR00281] segregation and condensation protein B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.499077 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCCCC ATGAAGCCGA CACCCAGCTG GATTTGACGT TGATCGCACG CATCGTCGAA
GGTGCATTGC TGGCCAGCAA TCAACCACTA ACACTGGCGC AACTGCAAGG CTTGTTCCCA
AACGACCCAC CGATCCCCCC GGATAGCATC CAGCGTGCCA TTGAACTGCT ACAGCACACC
TGTACTGAAC GCAGCGTAGA ACTCGTGGAA GTAGCCTCCG GTTTCCGTTT TCAACTCAAA
GCAGACGTGC ATGCTTGGGT CAGCCCGCTC TGGACAGAAC GCAAGACAAA ATACTCTCGC
GCCACACTTG AAACCTTAGC CCTCATTGCC TACCGCCAAC CGATCACACG TGGAGAAATC
GAGCAAATAC GCGGCGTCGC CGTCAACAGC AATATTATTC ACACATTGGA AGAACGCGAA
TGGATTCGTG TTGTCGGCCA TCGCGATGCA CCTGGCAAAC CAGCATTATT CGGTACTACC
AAAGCATTTC TAGATTACTT CGGACTTAAA CGTCTGGACG AACTACCGCC ACTATCGGAC
CTGAAAGACA TTGGCGAACT GGAACCGCAA TTGCCGCTGC ATAACAACCA CCGACACACC
GCACAGCTTC AAATTCAAAC AGACCAGACT CCCCAAACTC CCAACAGATC AATATCAGGC
ACAACAGCCC CCATATCGGG CATTTCTCCC CAACCAACCC AAGAGGTGAA TACCGAATGT
TGTTCTAGTA CACAGAGCAA CAGACCTGAT AACAATCGAC CTTGA
|
|---|
| Protein sequence | MSPHEADTQL DLTLIARIVE GALLASNQPL TLAQLQGLFP NDPPIPPDSI QRAIELLQHT
CTERSVELVE VASGFRFQLK ADVHAWVSPL WTERKTKYSR ATLETLALIA YRQPITRGEI
EQIRGVAVNS NIIHTLEERE WIRVVGHRDA PGKPALFGTT KAFLDYFGLK RLDELPPLSD
LKDIGELEPQ LPLHNNHRHT AQLQIQTDQT PQTPNRSISG TTAPISGISP QPTQEVNTEC
CSSTQSNRPD NNRP
|
|---|
| |