| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1520 |
|---|
| Symbol | smpB |
|---|
| ID | 6119961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 1583571 |
|---|
| End bp | 1584074 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641649509 |
|---|
| Product | SsrA-binding protein |
|---|
| Protein accession | YP_001776065 |
|---|
| Protein GI | 170730632 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0691] tmRNA-binding protein |
|---|
| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAACA AACATCCCAA GAATAAAGCA AAGAGCACAA CAACTCCAAA AACCATCGCT
CTGAACAAAC GTGCACGTCA TGAATACCAT CTGATTGAAC GCCATGAAGC CGGCCTGGAA
CTGCAAGGCT GGGAAGTCAA AGCAATCCGT GCTGGCCGTG CCAACCTTGG CGACGGCTAT
GCCTACGTGC GCGACGGCGA AATCTTTCTC ATCGGTGCCC AAATCACTCC GCTCATCCAA
GCATCCACCC ACGTTGTCGC CAACGACCGC CGTACCCGCA AACTACTGCT GCACCGCCGC
CAAATCGACA CACTGATCGG ACGAGTACAA CGTGAAGGCT TCACCCTGGT CCCAACCGCG
ATGTACTGGA GCAAAAATCG AGTCAAAATG GAGATTGCCC TAGCCAAAGG TAAACAGGCC
CATGACAAGC GCCATGCAGA GAAAGAACGC GAATGGCAAC GCGACAAACA GAGGATCATG
CGGGCCCATA ATCGCAACGC ATGA
|
|---|
| Protein sequence | MNNKHPKNKA KSTTTPKTIA LNKRARHEYH LIERHEAGLE LQGWEVKAIR AGRANLGDGY
AYVRDGEIFL IGAQITPLIQ ASTHVVANDR RTRKLLLHRR QIDTLIGRVQ REGFTLVPTA
MYWSKNRVKM EIALAKGKQA HDKRHAEKER EWQRDKQRIM RAHNRNA
|
|---|
| |