| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1447 |
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| Symbol | |
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| ID | 6121310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | - |
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| Start bp | 1511384 |
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| End bp | 1513291 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641649444 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001776000 |
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| Protein GI | 170730567 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGATT CCACTTGTTA TCCACGCTTG TCGCGTATCC AAACTCCAGA GGATCTCCGC
GCTTTTCAGG AGTCGGAGTT GCGTGCGGTT GCCGATGAGT TGCGGAATTA TCTGATCGAA
TCAGTAGGCC TCAGTGGCGG TCACTTTGCT GCTGGGTTGG GTGTGGTCGA ATTGACGATC
GCTTTGCATT ATTTGTACTG CACTCCTATC GATCAGCTTG TCTGGGACGT GGGTCATCAA
ACGTATCCGC ATAAGATATT GACCGGTCGC CGTGACAAGA TTAGTACGGT TAAGCATCAA
GGTGGTTTGG CACCGTTTCC GAAGCGTGAG GAGAGTATCT ATGACACGTT CGGTGTCGGT
CATTCTTCTA CTTCTATTTC AGCTGCGCTT GGGATGGCGA TTGTGGCGCA GCGTAATGGG
GATGAGCGTA AGGTGGTGGC CATCATCGGC GATGGTGCGA TGACAGCGGG GATGGCTTAT
GAGGCGCTTA ATCATGCTGG CGGGATGAGT CCTGCACCGA ATCTTCTTGT GATTCTTAAC
GACAATCGTA TGTCGATTTC CGAAGCGGTC GGTGGGCTTA CCAAGATGCT TGGTCGTGCG
ACTGGCAGCA AAGCATTGAA TGCGATCCGT GAGGGTGGCA AGAGAATTTT TGGGGATAAG
AAAACCAATG CAACCGCGCG TTTTTTACGT CGCTGGGAGG AGCATTGGAA GGGGATGTTT
GTGCCGTCGA CGTTGTTCGA AGAGATGGGG TTCCATTATA CCGGCCCGAT CGATGGCCAT
GATTTGCCGG CCCTTCTTGG TGCGTTGAAG ACGTTGCGTA CGTTGAAGGG TCCACAGTTG
TTGCATGTGA TCACAACCAA AGGGAAGGGG TATGAGCTGG CTGAGGGAGA CCAGATTGGT
TACCACGCCG TCGCCCCGTT TGATCCGCAA AAGGGTCTGA TTAAGGCGGG AGCAAAGAAG
CAAACATATA CGGACGTGTT TAGTGAGTGG TTGTGTGATA TGGCAGCGGT GGAACCACGT
TTGCTGGCTA TTACACCGGC GATGCGTGAG GGATCGGGGT TGGTGCGTTT TAGTCAGGAG
TATCCGCAGC GTTATTTTGA TGTGGCCATT GCTGAGCAGC ACGCGATAAC GTTGGCTGCT
GGTATGGCGA CTCAAGGTGC TAAGCCTGTG GTGGCGATTT ACTCGACCTT TTTGCAGCGT
GGTTACGATC AATTGGTTCA CGATGTTGCG TTGCAGAAGT TGGATGTGCT TTTTGCAGTA
GATCGCGGTG GTGTGGTTGG TCCAGATGGT GCGACGCATG CGGGTAATTT GGATCTCAGT
TTCCTGCGTT GCGTGCCAAA CATGATGTTG ATGGCTCCTG CCGATGAGGC AGAGTGCCGG
AAGATGTTGA GTACCGGTTT CCACTATTCT GGGCCAGTAG CGGTGCGTTA TCCGCGTGGT
ACGGGTCCTG GGGTGGTGCC GTCCGCTGAG TTGGATGTGT TGCCGGTTGG TGTGGCGCAG
TTACGTCATT CTGGTACACG GATCGCTCTA CTTGGTTTTG GGGTGTGCGT TGCTCCTGCT
GAACAGGTGG GGCGTAGGCT TGGTTTGACT GTGGTCAATA TGCGTTTTAT CAAACCGTTG
GATCGAACGT TGCTGTTGGA GTTGGCGCGT ACTCACGAAG TGTTTGTCAC GATTGAAGAT
AATGTGGTTG CTGGCGGAGC TGGCTCAGGG GTTGCGGAAT TACTTAACGC TGAAGGCATC
GTTTTGCCGA TTGTGCATCT TGGTCTTCCA GATGCGTTCC AGCAGCACGC TTCCCGTGAG
GATTTACTGG CTGAGGCGGG TATTGATGCG GCTGGTGTGT ACGCTGCGCT GTTAAGTCGT
TGGCCTGATT TGGCGGTACA GAACCATCCG CTGAGTGCGG TGAGTTGA
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| Protein sequence | MIDSTCYPRL SRIQTPEDLR AFQESELRAV ADELRNYLIE SVGLSGGHFA AGLGVVELTI
ALHYLYCTPI DQLVWDVGHQ TYPHKILTGR RDKISTVKHQ GGLAPFPKRE ESIYDTFGVG
HSSTSISAAL GMAIVAQRNG DERKVVAIIG DGAMTAGMAY EALNHAGGMS PAPNLLVILN
DNRMSISEAV GGLTKMLGRA TGSKALNAIR EGGKRIFGDK KTNATARFLR RWEEHWKGMF
VPSTLFEEMG FHYTGPIDGH DLPALLGALK TLRTLKGPQL LHVITTKGKG YELAEGDQIG
YHAVAPFDPQ KGLIKAGAKK QTYTDVFSEW LCDMAAVEPR LLAITPAMRE GSGLVRFSQE
YPQRYFDVAI AEQHAITLAA GMATQGAKPV VAIYSTFLQR GYDQLVHDVA LQKLDVLFAV
DRGGVVGPDG ATHAGNLDLS FLRCVPNMML MAPADEAECR KMLSTGFHYS GPVAVRYPRG
TGPGVVPSAE LDVLPVGVAQ LRHSGTRIAL LGFGVCVAPA EQVGRRLGLT VVNMRFIKPL
DRTLLLELAR THEVFVTIED NVVAGGAGSG VAELLNAEGI VLPIVHLGLP DAFQQHASRE
DLLAEAGIDA AGVYAALLSR WPDLAVQNHP LSAVS
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