Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_1435 |
Symbol | |
ID | 6121298 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | - |
Start bp | 1495436 |
End bp | 1497820 |
Gene Length | 2385 bp |
Protein Length | 794 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641649432 |
Product | bifunctional penicillin-binding protein 1C precursor |
Protein accession | YP_001775988 |
Protein GI | 170730555 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.443847 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCGTGC TTCCATCATT GTCGGCCTCC ATGTTTGGTC GTTTGCGCGA TGATCGTCCA TTGACTTGGC TGCGCTGGAG TTGTGCTGGA CTGCTTTCGC TGCTTCTTCT GTTGGATGTG CTTTGCCCAT TGCCATTACC GACCTCGCAC GATATGGCTT TGCTGGTGGT TGCTCGAGAT GGTACTCCAC TGCGTGCCTT CCCTGATGCT GATGGTGTAT GGCGCTACCC GGCGCAGTTG GGACAGGTGT CGCCGTTGTA TGTGCAGGCT CTGTTGACCT ATGAGGACCG TATGTTCTGG CGCCATCCGG GGGTGAATCC TTGGGCGTTG TTACGTGCTG GGGGCCTGTG GCTGCGTTAT GGTCATGTCG TTTCCGGTGG CTCGACGTTG ACAATGCAGG CGGCACGGAT TCTTGAGCCG CATGGCCGTA CTCCTTGGGG CAAACTCAAG CAGTTGTTGC GTGCAGTACA GTTAGAAGTC CATTTGAGTA AGCGCCAGAT TTTGCAGTTG TATTTGGAAC GTGCCCCTTA CGGAGGGACG ATCCAGGGCG TTGAGGCGGC AAGCTGGGCT TATCTTGGCA AGTCGGCGGC ACGCTTATCG CATGCTGAGG CGGCGTTGCT GGCGGTATTG CCGCAGTCGC CAAGCCGGTT GCGTCCGGAC CGTAATCCGC AGTTGGCACG GCAAGCACGC GATAAGGTGC TGGCACGCAT GGCAGTGCTT GGGGTCTGGT CCTCTGAAGA GGTGAAAGAT GCTCGGCTGG AGCCGGTGGT TGCGCGTGCA TTGCAGCCAC CCATGTACGC GGCGTTGTTG GCGCAGCGTC TGCGTGTGCA ACGGCCACAT GCTGCACGCA TTGTGACCAC GTTGGACATT GATTTGCAGC GTACTCTTGA GGAAAGAGTG AGTACCTATT TCTCACCGTT ACCTGAGCGC ACTTCTGCTG CGGTGCTGGT GATGGATAAT CAAAGCCTGG AAGCACGTGC CTACGTTGGT TCGGTGACAT TCGGTGATGC CAAGCGGTTG GGTCACGTGG ATATGGTGCG GGCTTGGCGT TCGCCGGGTT CCACACTTAA ACCGTTTCTT TATGGAATGG CGTTGGATCA GGGCTTGATT CATTCTGAGA GTCTGTTGGT CGATGCGCCA CAGCATTTTG GTGATTATCG TCCGGGTAAT TTCGATGCTG CGTTCACTGG CCCTATTGGT GCGTCCAGTG CATTGCGACA GTCGTTGAAC GTGCCTGCAG TCGATTTGTT GGAACGGATT GGGCCGGCTC GGTTTGCGAC GCGTCTGGCG CATGCAGGGG TGCAGTTGCG TTTTCCACGC GGTGCCACCC CGAATTTGGC GTTGATCCTC GGGGGCGCAG GGGCACAGTT GCAGGAGCTG GTGGGTGCCT TCTCGGTGTT CAACCGCGGT GGCGTGGCAG GACGGGTGCG TTATACCCCG GAGGATCCGC GTATTGAGCG TCGTTTGATC TCCCCTGGTG CGGCTTGGAT TGTGCGCGAG ATTCTTGCTG CTAACCCGCG CCCTGGGTAT GGCAGGGGCA CGTTCGATAC TGCGATGCGT CCGTCCGTGG CTTGGAAGAC TGGTACCAGC TATGGTTTCC GTGATGCTTG GGCGCTGGGG AGTACCCGCC GCTACACAGT GGGTGTTTGG GTTGGGCGTC CGGATGGTAC CCCGCTGCCA GGTCAGTATG GTGCGATTAC CGCATTACCG TTGTTGTTTG ATGTGATTGA TGCGTTGCCA CGCGCGCCTG GTGATGCTGT GCCGGAGCCG ATGCCAGCCA GCGTGGAGCA GGTTGATATC TGTTGGCCGC TGGGTTTTGC TGCTGCTAGC ACGCTGCCGG AATTGTGCCG ACGGCACTAT AGTGCCTACG TATTGGATGG TGTGGTGCCG CCGACCTTCG CTGAGCGTGA TGCGAAATTG TGGCGTAGCG GTTTGGAACG ATTCCAGGTC GATGTGCGTA GTGGTTTGCG TGTTAGGCCT GATTGTCGTC TGCCGCATCT GATCAGGGAG CAGCAGATTG CACGTTGGCC GACGTTGGTG ATCCCATGGC TTGATGCTGT GGAGCGTCGT GCGACGCATC TGCCTCGGCT GGCCTCAGAC TGTTCTGAGG ATGATCGTGC TGATGCCGGG GTGCTGTACA TCGATGGTCT CGTTGAAGGC GCCACATTGC AGCGTCCACC TGGTAGTACC AAGCCGGTAC ATCTGCAGTT GCGTGCCTTG GGGAGTGAAA CACGGATCGA CTGGCTCTTG GATGGGCGCT GGATTGCTCA AACTGTGGGG GGACAGACCT TTCAGCGTGA TTTCCCAGAA CCAGGGACGT ATATCTTGAC TGCGTTGGCT GAGGATGGTG CTTGGAACAG GATGCAGTTC CGCGTTTTAC GTTAA
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Protein sequence | MFVLPSLSAS MFGRLRDDRP LTWLRWSCAG LLSLLLLLDV LCPLPLPTSH DMALLVVARD GTPLRAFPDA DGVWRYPAQL GQVSPLYVQA LLTYEDRMFW RHPGVNPWAL LRAGGLWLRY GHVVSGGSTL TMQAARILEP HGRTPWGKLK QLLRAVQLEV HLSKRQILQL YLERAPYGGT IQGVEAASWA YLGKSAARLS HAEAALLAVL PQSPSRLRPD RNPQLARQAR DKVLARMAVL GVWSSEEVKD ARLEPVVARA LQPPMYAALL AQRLRVQRPH AARIVTTLDI DLQRTLEERV STYFSPLPER TSAAVLVMDN QSLEARAYVG SVTFGDAKRL GHVDMVRAWR SPGSTLKPFL YGMALDQGLI HSESLLVDAP QHFGDYRPGN FDAAFTGPIG ASSALRQSLN VPAVDLLERI GPARFATRLA HAGVQLRFPR GATPNLALIL GGAGAQLQEL VGAFSVFNRG GVAGRVRYTP EDPRIERRLI SPGAAWIVRE ILAANPRPGY GRGTFDTAMR PSVAWKTGTS YGFRDAWALG STRRYTVGVW VGRPDGTPLP GQYGAITALP LLFDVIDALP RAPGDAVPEP MPASVEQVDI CWPLGFAAAS TLPELCRRHY SAYVLDGVVP PTFAERDAKL WRSGLERFQV DVRSGLRVRP DCRLPHLIRE QQIARWPTLV IPWLDAVERR ATHLPRLASD CSEDDRADAG VLYIDGLVEG ATLQRPPGST KPVHLQLRAL GSETRIDWLL DGRWIAQTVG GQTFQRDFPE PGTYILTALA EDGAWNRMQF RVLR
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