Gene Xfasm12_1316 details

Gene Information

• Locus tag: Xfasm12_1316
• Symbol: uvrC
• ID: 6121257
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: +
• Start bp: 1375013
• End bp: 1376896
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 641649321
• Product: excinuclease ABC subunit C
• Protein accession: YP_001775879
• Protein GI: 170730446
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0322] Nuclease subunit of the excinuclease complex
• TIGRFAM ID: [TIGR00194] excinuclease ABC, C subunit

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.235211
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCAACATC ATTGGAATAT GAGGGATAAC GCACCAATCT CATTTGATGG AAAAAGGTTC 
GCCGCACATC TGAGTACGGC GCCTGGCGTC TATCGTATGT ACGCTGCTGA CGACACGTTG 
TTATACGTTG GCAAAGCAGG GGCGCTGCGC AAACGCGTTG CCAGCTATTT CAATGGCACT 
CCAAAAAATA CCCGGCTGAC CGCCATGCTC GCCCAGGTGG TACGCATGGA CGTCACCATC 
ACGCGCAACG AAGCCGAAGC CCTGCTGCTG GAGAACCAGC TCATTAAATC ACTGGCTCCG 
CGCTATAACG TCTTGCTGCG AGACGACAAG AGTTATCCAT ACGTACTGCT GACACGTGAG 
GCATGGCCAC GCATTGCACT GCATCGCGGC CCACAGATCG TTCCAGGCCG CTACTTCGGC 
CCCTATCCGG GGGTAACCGC GGTACGCGAC ATGCTGAATC TCATACACAA ACTATTCAAA 
CTACGCAGTT GTGAAGACAG TGTGTTCCGC AACCGTTCGC GACCATGCCT GCAATATCAA 
ATTGGACGTT GCAGTGCACC GTGTGTCAAC GTGGTCACAC ACGATAATTA CACTGAGGCA 
GTACACCGTG TGACGCTGTT TCTTGAAGGA AAAAGCGATC TGCTTGCAGA AGAGTTGATA 
CAAGCAATGC AAGTTGCCAG TGAACATCTG GAATTCGAGC AGGCCGCGCG GTTGCGCGAC 
CTGCTCACCT CATTACGCAG CATGCAAAAT CGGCAATACG TGGACGGACG CGCCGCAGAT 
TTAGATGTGC TGGCCTGCGC GGCTCTATCC GGTCACGCCT GCGTACTGCT GCTCAGTTTC 
CGTGATGGCC GCAATCTTGG CACGCGTATG TTCTTCCCCA AGACAAATGG TGAAGAACGC 
ACCGCTGAGA TACTCAGTGC CTTTGTCTCT CAATACTACG CGGAGTACCC ACCTCCACCG 
GAGATCCTGC TGGACCAAGA AATCCCCGAT CACACACTCC TGGAAGCCGC ATTCAGTCGT 
TCCAGCGCAC ATAAAATCAG CCTACGCTGG AACGTCCGTG GTGAGCGTGC CGGTTACGTC 
GAGTTAGCCG TACGTAACGC TCAAGTAGCC TTATCCACCG AACTCACCAG CCAACGTGCC 
CAGCGGGTAC GTAGTGAAGC AGTACGTCAA CTGCTCGGTC TGGAGGGGCC GGTTAAGCGT 
GTAGAATGCT TCGACATTAG TCACACGATG GGCGAGGCCA CGGTTGCCTC CTGTGTGGTG 
TTTGATGCTG TTGGTCCGGT ACGTTCCCAA TATCGGCGTT ACAACATCAC TGGCATTACC 
CCTGGTGACG ACTATGCAGC GATGCGTCAG GCCATCGAGA GGCGCTTCCG CCGTGCGGTT 
GAAGAAGACA AACAGGGAGA ACGACCGGAC GTGCTATTCA TTGACGGTGG TGCTGGCCAG 
TTGGCACAAG CCAAGATGGC ACTCAACGCT GTTGGGGTGG AAAGCGTGCT GCTGGTCGGC 
GTGTCCAAGG GCGAAGAGCG CCGTGCAGGA CACGAGACGC TGATTATGCT GGATGGACAG 
GAGCTGCATC CTGGAGCAGC TTCACCCGCG TTGCAGTTCA TCCAGCAGGT GCGTGACGAG 
GCACACCGAT TTGCAATCAC TGGACACCGC GCACGTCGGC AAAAAACGCG GATGACCAGT 
AAATTAGAAG ACATTCCTGG AATCGGCTCA CGCCGCCGCG CCAATCTTCT CAAGCATTTT 
GGTGGACTGG CGGGAGTCAA AGCTGCTGGC CAAACCGAGA TTGCCAGGGT GGAAGGCATC 
AGTACTGCGC TGGCAGCCAA GATTTACGCC AGCCTGCATG GACTATCGAA AAATGATGCA 
GCAGATGCGT CGAGGATGTC ATGA 

 

Protein sequence

MQHHWNMRDN APISFDGKRF AAHLSTAPGV YRMYAADDTL LYVGKAGALR KRVASYFNGT 
PKNTRLTAML AQVVRMDVTI TRNEAEALLL ENQLIKSLAP RYNVLLRDDK SYPYVLLTRE 
AWPRIALHRG PQIVPGRYFG PYPGVTAVRD MLNLIHKLFK LRSCEDSVFR NRSRPCLQYQ 
IGRCSAPCVN VVTHDNYTEA VHRVTLFLEG KSDLLAEELI QAMQVASEHL EFEQAARLRD 
LLTSLRSMQN RQYVDGRAAD LDVLACAALS GHACVLLLSF RDGRNLGTRM FFPKTNGEER 
TAEILSAFVS QYYAEYPPPP EILLDQEIPD HTLLEAAFSR SSAHKISLRW NVRGERAGYV 
ELAVRNAQVA LSTELTSQRA QRVRSEAVRQ LLGLEGPVKR VECFDISHTM GEATVASCVV 
FDAVGPVRSQ YRRYNITGIT PGDDYAAMRQ AIERRFRRAV EEDKQGERPD VLFIDGGAGQ 
LAQAKMALNA VGVESVLLVG VSKGEERRAG HETLIMLDGQ ELHPGAASPA LQFIQQVRDE 
AHRFAITGHR ARRQKTRMTS KLEDIPGIGS RRRANLLKHF GGLAGVKAAG QTEIARVEGI 
STALAAKIYA SLHGLSKNDA ADASRMS