| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1007 |
|---|
| Symbol | |
|---|
| ID | 6121491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 1088182 |
|---|
| End bp | 1089087 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641649038 |
|---|
| Product | haloalkane dehalogenase |
|---|
| Protein accession | YP_001775602 |
|---|
| Protein GI | 170730169 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0490132 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTATC ACGATTACCC CTTTCTCTCG CAGTGTTTTG AGGTCCGTCC GGGGATCAGG
ATGCGTTATC TGGACGAAGG TCCGCGTGAC GCAGCGGTGG TGGTCATGCT GCACGGCAAT
CCTTCGTGGA GTTATTACTG GCGTCACTTG GTGGCGGCGT TGCGTGATGG GTATCGCTGT
ATCGTTCCGG ATCACATTGG TATGGGGTTG TCAGATAAGC CCGGGGACGC GCCGGGTGTG
GTGCCACGTT ACGATTACAC GTTGCAATCT CGCGTGGATG ATTTGGATGC GTTGTTGCGT
CATGTGGGTA TTGACGATGT CACGCCGTTG ACGCTGGCAG TACACGATTG GGGGGGCATG
ATCGGGTTTG GCTGGGCGTT GGCGCATGCT GTGCAAGTGC GGCGCTTGGT GATTACCAAC
ACGGCGGTAT TTCCGATGCC GATGTCTAAG AAGATGCCGT GGCAGATTGC CTTGGGGCGT
GATTGGAGGT TCGGCGAATG GATGGTTCGT GGGTTGAATG CTTTTGCACT GGGTGCGGCC
TGGTTGGGGG TGGAAACACG GTTGCCGCGT GCGGTGCGCC GTGCCTATTT GGCACCCTAT
AACAGTTGGG CCAATCGGAT TTCGATCATC CGTTTTATGC AGGATATTCC GTGTGCTCCA
GGGGATCGTG CTTGGCCGTT GTTAGAAGCT GCCGGCAAGG CACTGCCCAA CTTTGCTGAT
CGTCCTGTGT TCATTGGTTG GGGGATGCAG GATATTGTGT TTGATCATCA TTTTTTGGAT
GAATTCCGCG CTGCTTTGCC GTGTGCGCAG GTGCAGGTTT TTGGTGATGC CGGTCACTAT
GTTCTGGAAG ATAAGAGCAG TGTTCTGGTG CCGGCGATTC GTGCGTTTCT TGATGCGCAC
CCATAG
|
|---|
| Protein sequence | MSYHDYPFLS QCFEVRPGIR MRYLDEGPRD AAVVVMLHGN PSWSYYWRHL VAALRDGYRC
IVPDHIGMGL SDKPGDAPGV VPRYDYTLQS RVDDLDALLR HVGIDDVTPL TLAVHDWGGM
IGFGWALAHA VQVRRLVITN TAVFPMPMSK KMPWQIALGR DWRFGEWMVR GLNAFALGAA
WLGVETRLPR AVRRAYLAPY NSWANRISII RFMQDIPCAP GDRAWPLLEA AGKALPNFAD
RPVFIGWGMQ DIVFDHHFLD EFRAALPCAQ VQVFGDAGHY VLEDKSSVLV PAIRAFLDAH
P
|
|---|
| |