| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0889 |
|---|
| Symbol | sucA |
|---|
| ID | 6120748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 960612 |
|---|
| End bp | 963503 |
|---|
| Gene Length | 2892 bp |
|---|
| Protein Length | 963 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641648939 |
|---|
| Product | 2-oxoglutarate dehydrogenase E1 component |
|---|
| Protein accession | YP_001775504 |
|---|
| Protein GI | 170730071 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.315483 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACTCTAG GACGTCGCTT AGACATATCC GTGCATTGCA GACGTAGCCA ACCCCCATCG
ACCCGACTAA GCATCGTGGA CAATCTAATC AAGCAGTTTA CCCAATCCTC TCCTCTGGCC
GGCGGCAATG CCGCCTACAT TGAAGATCTT TACGAGCAAT ACCTTGTCTT GCCCAATAGC
GTCGATCCCA AGTGGAAAGC TTACTTCGAC GGTTTTAAGG GACGTGATGC AGGTGACATC
CCACACTCGG CGGTCATCGC TCATATCACC GACACAGCCA AGCAAAGTGT CAAGCAGGGC
CCAAGCGACG AACGGGAACG CAACATCGGC CGTCTCATCA CCGCTTATCG CTCACGTGGC
CATCTCGGTG CCCGAATCGA TCCACTGGGG CTGGCTCCGC CAAGTAACCC GCCTGATCTA
GATCTGCCAT TTCATAATCT ATCGCAAGCC GATCTCGACA ATGAATTCAG CACGGGTGGC
ATCGGTGGCC AGCCACGGAT GAAGCTGCGC AATCTGCTCG CACACTTAAA AGCAACCTAT
ACCGATACCA TCGGCACAGA ATTCATGCAT ATCTCTGAAT TCGAACAGCG CCAGTGGATC
TATCGGCGTC TGGAAAGTGT CAGTGGCAAA ATTGCTAGTA ACGCGACCAA CCGCAAACGC
ATCCTCGAGC GTCTGACCGC CGCAGAGGGC CTGGAACGTT ATCTGCATAC GAAATATGTA
GGACAGAAAC GCTTCTCTCT GGAGGGAGGT GATGCATTGA TTCCGTTGAT GGACACCTTG
GTGCGTCAAG CCGGCAACAA TGATGTCAAG GATATCGTAG TCGGTATGGC CCACCGCGGC
CGACTAAACG TGCTGGTCAA CACGTTGGGC AAAAATCCAC GCAAATTGTT CGACGAGTTC
GAGGGCAAGT TCGAGCACGC CCATCACGAC CGCGCTCACA CCGGTGACGT GAAATACCAT
ATGGGCTTCT CAGCTGACAT CGCCGTCGGC GATGGCAAGC AAGTACATTT GGCGCTCTCC
TTCAATCCAT CGCACCTTGA AATCGTTGAT CCAGTCGTTG CAGGGTCAGT ACGTTCGCGT
CAAGAGCGCT TCGGAGACAC AGAACGCAAA ACCGTGCTAC CAATCCTGAT CCATGGCGAC
GCTGCATTCG CCGGCCAAGG TGTGGTCATG GAACTGCTCC AGATGTCACA GGCACGTGGC
TTCGCAGTGG GCGGCACTCT GCATGTGATC ATTAATAATC AAATCGGCTT CACCACCAGT
GCGCGGGATG ACGCTCGCTC CACTCCATAC TGCACTGATG TCGCCAAAAT GATTGGCGCA
CCAGTGTTCC ACGTTAACGG TGACGATCCA GACGCCGTCG TTTTCGTAGC GCAACTGGCC
TACGAATTCC GCCAGCAATT CAAAAAAGAC GTAGTCATTG ATCTAGTTTG CTACCGCCGC
TGGGGACACA ATGAGGCAGA TGAACCGGCT GCAACGCAAC CAGTGATGTA CCAGACCATC
CGGAAGCACA AAACCACCCG CGAGCTTTAC GCAACCAAGC TAGAGGGCGA AGGCGTCATT
GCGGCAGGCG AAGCCAAAGC AATGGTAGAT GACTACCGAG CCAAACTGGA CTCAGGCAAG
TTCACCACTG AGCTTGCAAG CAAACACACG GATGAATTCG TCATCGACTG GTCCAAGTAC
CTGTCCGGAA AACTAGAGGA TACGGTCAAG ACCAGCGTGA AGCGTCAGAC GCTGAACAAG
TTGGCCGCAC TCATCAATAC CACTCCAGCC ACTGTGGAAT TGCACCCACG TGTCGCCAAG
ATCTATGAAG ACCGCATCAA AATGGCTGCT GGCGAACAGC CGGGTGACTG GGGCTTTGCC
GAAAATCTGG CCTATGCCAC GTTGCTGGCT GAAGGCCACA AGCTACGCTT GGTCGGCCAA
GACGCCGGAC GCGGCACCTT TTTCCACCGC CACGCCATCC TGCACGATCA AAAAACCGAC
AGCTATTATC TGCCGCTGCG CCAACTGGTC AGCAACCCGG ACGATGCGAC GGTAATCGAC
TCGCTGCTCA GCGAGGAAGC CGTTATGGGC TTTGAGTATG GTTACTCGAC CACCGATCCC
AACACGCTGT GTATCTGGGA AGCGCAGTTC GGCGATTTTG CCAACGGTGC CCAAGTGGTC
ATTGATCAAT TCATCGCTGC CGGTGAGGTC AAATGGGGTC GAATTAGCGG CCTGTCGCTA
TTCTTACCGC ACGGTTATGA GGGCCAAGGT CCGGAACATA GTTCCGCACG TTTAGAACGT
TTCCTGCAAT TGTGTGCACT GGAAAATATG CTGGTCTGCG TGCCCACCAC TCCAGCGCAA
GCATTTCACA TGATCCGTCG ACAGATGCGC ATGTCCACGC GGAAACCGCT GGTCGTCATG
ACGCCTAAAT CACTGCTACG CCACAAGCTG GCAGTCTCTA CTTTGGACGA ACTGGCTAAC
GGTAAGTTCC AACACATCAT CCCAGACGAT GCAGCTGACC CTAAACACGT CAAGCGCATC
GTTATGTGTG CCGGCAAGGT CTATTACGAC ATATTGGAAA ACCAGCAGAA ACGAAGCCAA
AACGACGTAG CCATCATACG TATCGAGCAG TTGTATCCGT TCCCGCGTGC GTTGCTGGCC
AGCGAACTAA AACGCTTCAA CAAGGCTACC GATGTCGTTT GGTGCCAGGA AGAGCCGCAA
AACCAAGGTG CGTGGTACCA AATCAAGCAT CACCTACAAG CCGTATTGGC ACATGGTCAG
AGGCTTCACT ATGCCGGCCG CTCAAGTTCT CCATCTCCAG CCGTTGGGCA CATGGCAGAA
CATATGGCCG AGCAAGAAAG CCTCGTTGCC GATGCACTGT TGAATCCGTT CAACGATCAT
GTCGCTGAAT AA
|
|---|
| Protein sequence | MTLGRRLDIS VHCRRSQPPS TRLSIVDNLI KQFTQSSPLA GGNAAYIEDL YEQYLVLPNS
VDPKWKAYFD GFKGRDAGDI PHSAVIAHIT DTAKQSVKQG PSDERERNIG RLITAYRSRG
HLGARIDPLG LAPPSNPPDL DLPFHNLSQA DLDNEFSTGG IGGQPRMKLR NLLAHLKATY
TDTIGTEFMH ISEFEQRQWI YRRLESVSGK IASNATNRKR ILERLTAAEG LERYLHTKYV
GQKRFSLEGG DALIPLMDTL VRQAGNNDVK DIVVGMAHRG RLNVLVNTLG KNPRKLFDEF
EGKFEHAHHD RAHTGDVKYH MGFSADIAVG DGKQVHLALS FNPSHLEIVD PVVAGSVRSR
QERFGDTERK TVLPILIHGD AAFAGQGVVM ELLQMSQARG FAVGGTLHVI INNQIGFTTS
ARDDARSTPY CTDVAKMIGA PVFHVNGDDP DAVVFVAQLA YEFRQQFKKD VVIDLVCYRR
WGHNEADEPA ATQPVMYQTI RKHKTTRELY ATKLEGEGVI AAGEAKAMVD DYRAKLDSGK
FTTELASKHT DEFVIDWSKY LSGKLEDTVK TSVKRQTLNK LAALINTTPA TVELHPRVAK
IYEDRIKMAA GEQPGDWGFA ENLAYATLLA EGHKLRLVGQ DAGRGTFFHR HAILHDQKTD
SYYLPLRQLV SNPDDATVID SLLSEEAVMG FEYGYSTTDP NTLCIWEAQF GDFANGAQVV
IDQFIAAGEV KWGRISGLSL FLPHGYEGQG PEHSSARLER FLQLCALENM LVCVPTTPAQ
AFHMIRRQMR MSTRKPLVVM TPKSLLRHKL AVSTLDELAN GKFQHIIPDD AADPKHVKRI
VMCAGKVYYD ILENQQKRSQ NDVAIIRIEQ LYPFPRALLA SELKRFNKAT DVVWCQEEPQ
NQGAWYQIKH HLQAVLAHGQ RLHYAGRSSS PSPAVGHMAE HMAEQESLVA DALLNPFNDH
VAE
|
|---|
| |