| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0856 |
|---|
| Symbol | |
|---|
| ID | 6121418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 926042 |
|---|
| End bp | 927742 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641648908 |
|---|
| Product | general secretory pathway protein E |
|---|
| Protein accession | YP_001775473 |
|---|
| Protein GI | 170730040 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.67783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTAA GTATGGAAGC ATCCATCGTT GAGTCGTTGT TGCAGCGTCG TTGCTTGAAA
GAAAGTGATC TGTATCGCGC GCGTCAGTTG CAGGCCGAAT CCGGTGTTGG GTTGTTACCT
TTGTTGGGCC GTCTTGGTTT GGTTTCTGAG CGCGATCACG CTGAAGTATG TGCGGAGGTG
ATGGGGCTGT TGTTGATACA GGTGCGTGAA TTGCCGGATA CGCCGCCAGA ATTCTCGGCG
GAGGTGCATG GGTTGTCCAT TCGCTTTCTC AAACAGTTCC ATGTATGCCC GCTTGCTGAG
CATGATGGTG TGTTGCAGTT GTGTGTTGCA GATCCATTTG ATGTGTACGC CATTGAGGCG
TTGCGCCTTG CCACAGGTGC AGTATTGCAA TTGTGTATCG GTTTGCGTTC CGAAATTGAT
GACTTGGTCG AGCGCTGGTA TGGCCAAGGC CGCAGCGTCA TGGGCATGAT TGTGGAGGCG
ACCGATGGTG ATGCGGCGCC CGCAGATGAC ATTGAGGCTT TGCGTGATCT GGCGTCTGAA
GCGCCTGTGA TCCGGCTGGT GAACTTGGTG ATTCAGCGTG CGGTTGAATT ACGCGCCTCT
GATATCCATA TCGAACCATT CGAGAATCGG TTGAAGGTAC GTTATCGCGT CGATGGCGTG
TTGATTGATG CGGAGAGTCC GCCATCTAAA TTGGCTGCTG CTGTGGTTTC ACGTGTCAAG
ATTATGGCCA AACTTAATAT TGCTGAACGC CGCTTGCCCC AGGATGGGCG AATCATGTTG
CGTGTTCAGG GTAAAGAGCT GGATCTGCGG GTGAGTGTTG TGCCGACTTC ACATGGTGAA
AGCGTCGTGA TGCGCCTGCT TGACCGGGAG ACGGTGGTAT TCGATTTTCA GAAGCTTGGT
TTTACCGATG AGTTATTAAA CAGGTTCTCC CGTGTGTTGG AGATGCCTCA TGGCATTTTA
CTGGTCACGG GTCCGACGGG ATCTGGAAAG ACCACCACGC TGTATACGGT GTTAAATCGT
CTCAATACTA CCGGTGTCAA GATTATTACG GTGGAAGATC CGGTTGAGTA TCAGATTGAA
GGTATCAATC AGATCCAGGC TAAGCCGCAG ATCGGGCTGG ATTTTGCCAG CGCACTACGC
AGCATTGTGC GTCAGGATCC GGACATCATC ATGATTGGTG AAATGCGGGA TCTGGAAACT
GCGCGCATTG CTATCCAGTC CGCGCTGACG GGGCATTTGG TGCTGTCTAC TTTGCATACC
AATAGTGCTG CCGGTGGGCT GACCCGATTA CTGGATATGG GTGTGGAGGA TTATTTGTTG
ACCTCCACAA TCAATGGTGT TTTGGCACAG CGTTTGGTGC GTCGCTTGGA GCCTACGCAT
GCTGAGCGTT ATCTTGCTTC GCCAGAGCAG ATTGCGCGTT TTGATTTGCG CCGTTTACAG
CCAGAGGGTG ATATTTATTT GTACCGTCCG CGCGCTTCAG CGCTTGCGCC CACTGGGTAT
CTGGGCCGTA CGGCGATCGT CGAGTTTCTG ATTATGGATG ATGTGCTGCG TCGCGCGGTG
ATCAGCCGTA CCGGCATAGG GGAGTTGGAG CAGATCGCAC GTCAAGCAGG GATGCGTACT
ATGTACGAGG ACGGTCTCAT CAAGGCATTG GCTGGTGAGA CTACAATTGA AGAGGTCTTG
CGCGTGACGG AGGAAGGCTG A
|
|---|
| Protein sequence | MNVSMEASIV ESLLQRRCLK ESDLYRARQL QAESGVGLLP LLGRLGLVSE RDHAEVCAEV
MGLLLIQVRE LPDTPPEFSA EVHGLSIRFL KQFHVCPLAE HDGVLQLCVA DPFDVYAIEA
LRLATGAVLQ LCIGLRSEID DLVERWYGQG RSVMGMIVEA TDGDAAPADD IEALRDLASE
APVIRLVNLV IQRAVELRAS DIHIEPFENR LKVRYRVDGV LIDAESPPSK LAAAVVSRVK
IMAKLNIAER RLPQDGRIML RVQGKELDLR VSVVPTSHGE SVVMRLLDRE TVVFDFQKLG
FTDELLNRFS RVLEMPHGIL LVTGPTGSGK TTTLYTVLNR LNTTGVKIIT VEDPVEYQIE
GINQIQAKPQ IGLDFASALR SIVRQDPDII MIGEMRDLET ARIAIQSALT GHLVLSTLHT
NSAAGGLTRL LDMGVEDYLL TSTINGVLAQ RLVRRLEPTH AERYLASPEQ IARFDLRRLQ
PEGDIYLYRP RASALAPTGY LGRTAIVEFL IMDDVLRRAV ISRTGIGELE QIARQAGMRT
MYEDGLIKAL AGETTIEEVL RVTEEG
|
|---|
| |