| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0851 |
|---|
| Symbol | |
|---|
| ID | 6121413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 919432 |
|---|
| End bp | 920259 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641648904 |
|---|
| Product | protoporphyrinogen oxidase |
|---|
| Protein accession | YP_001775469 |
|---|
| Protein GI | 170730036 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2890] Methylase of polypeptide chain release factors |
|---|
| TIGRFAM ID | [TIGR00536] HemK family putative methylases
[TIGR03534] protein-(glutamine-N5) methyltransferase, release factor-specific |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCAC CGATCGCTTT GCTTGCCACC GCCACTGAAC GCATTGAGCG AGTCGATGCA
GAAGCCTTGC TATTGTATGC TCTGGACTGC GATCGGGCGT GGCTGTTCAC CCATGGGGAC
ATCCCCCTGG CAGCGGCAGC TACGGAGAGC TTCCAAGCGC TCGTGGAGCA ACGTGCTCGC
GGTATCCCCG TGGCTTATCT GATTGGGCGG CGTGGATTTT GGACGCTTGA TGTAATTGTG
TCCTCAGCAA CGCTGATTCC GCGTGCAGAA ACAGAAACGT TGGTCGAACA AGCATTGCAG
CGACTCGACC ATGCTTCAGA GCGACGCGTG GCCGATCTGG GCACCGGCAG CGGCGCCATT
GCACTCGCTA TTGCTTGCGA ACGGCCGCAA GCACAGGTGT TAGCCACCGA TAACAGCGCA
GCCGCGCTCG ACATTGCCGC ACGCAATGCC AGCGCACATC GGCTAAATCA TGTGGTGTTT
CGAGAAGGCA ATTGGTATGA GGCACTGTTG GGGGAACGCT TTGATCTGAT CGTCAGCAAT
CCCCCTTACA TTGCCGTCAC TGATCTACAT TTGACGCAGG GTGATCTGCG TTTTGAACCA
CCATCGGCAT TGATCTCTGG TAGCGACGGA TTGGACGCAC TGCGCATCCT CGCTGCAGGG
GCACCAGCAC ATTTACGACC AGGGGGTTGG TTAGTGCTGG AGCATGGTTG GGATCAAGGT
GCGGCCATGC GGACATTACT GCACACTGCG GGATTGGTGG CAGTGGCCAC CGTGCAAGAC
TTGGAAGCAC GCGACCGCGT CACCGTGGGG CGCTGTCCTG GTTTTTAA
|
|---|
| Protein sequence | MPSPIALLAT ATERIERVDA EALLLYALDC DRAWLFTHGD IPLAAAATES FQALVEQRAR
GIPVAYLIGR RGFWTLDVIV SSATLIPRAE TETLVEQALQ RLDHASERRV ADLGTGSGAI
ALAIACERPQ AQVLATDNSA AALDIAARNA SAHRLNHVVF REGNWYEALL GERFDLIVSN
PPYIAVTDLH LTQGDLRFEP PSALISGSDG LDALRILAAG APAHLRPGGW LVLEHGWDQG
AAMRTLLHTA GLVAVATVQD LEARDRVTVG RCPGF
|
|---|
| |