Gene Xfasm12_0725 details

Gene Information

• Locus tag: Xfasm12_0725
• ID: 6120487
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: +
• Start bp: 776252
• End bp: 778174
• Gene Length: 1923 bp
• Protein Length: 640 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 641648784
• Product: hypothetical protein
• Protein accession: YP_001775349
• Protein GI: 170729916
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3170] Tfp pilus assembly protein FimV
• TIGRFAM ID: [TIGR03504] FimV C-terminal domain; [TIGR03505] FimV N-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGGTGGT TATTACCCTT TGCCGTTTGC GCGAGTAGCA ATACTGATCG TATTGTGGTC 
ATTCGATCCA CAATTCCGGC TGCACCGGTT ATATTGGTGT TCATGAAATC TATGGGCAAG 
GGCGTATTAA GCCCGGTATA TGGCTTGACT GCCTTGTTTT TAGTGCTGTG CAGCAATGCT 
GCGTTGGCGC TGGGGCTTGG TGATATTCGT GTGCTTTCCA AGCCAGGGCA GCCTTTGGTA 
GCAGAGATCC CTGTGATCTC TAACGAGGCC GGCGAGCTTG ACGATGTGCG CGTTGCGCTG 
GCTTCGCCAG AGACCTTCGC CCGGGTTGGA TTGGAGCGCC CCAACGGTTT TCTAGACGAT 
TTGCAGTTTC AATTCTCCAA GGATCGTCAC GGTCGCGCGG TTGTTCGGGT GACTAGCAAC 
CAGTCTGTGC AGCAGAAGGC AATCAACTTT TTGATTGACG TGGAGTGGAA ACAAGGGCGG 
TTAGTACGTG AATACTCCGC TTTGATTGAT GCGCCTAATA CTGCCGCAGC AATTGCTGAG 
CCGGCGATCA ATGCGCCGCA GGTGGCTTCT GCCAATGTCA TTGTGCGTCC TGCGCCAGCC 
CCCAGCGTTC CTGTGCCCCC TCCCCCTCCT GCCGTTCCCG TTACTGCGCC GACCCCCTTC 
ATATCCAGTG TGGACGAGGC GACGGATACA GCCTCGGCCG ATGTGGGTGA TGCAACAGAA 
ACAGAAGGTG TAGGGACCGT GGGCACTCCT GCTGCGCCGC CATCCGATGC AGGGCCGGTC 
ACGGTGCAAC GCGGCCAAAC ACTATCGCAA CTTGCTTCTC AGTTAGCGCG CCAGAGTGGG 
CGCACCTTGG ACCAAACCAT GCTGGCGATG TTGCGTACTA ATCCGAGTGC CTTCATCGGT 
AGCAATATCA ACTTACTTAA ACAGGGTGCT GTGCTGCGCA CTCCCACGCA GGAGGCGCTG 
AGTGAGCTTG GGGCTGCCGA AGCTAAGGCA ATGGTGCGTG AACAGGCTGC GCAGTGGCGT 
CAAGCACGTG CAAGCATCCC GCAGCCAGCC GAATCATGGG CTGCGTCACA GTCGCGTGCT 
GTTGCTGGTC CCGATACAGC GACGGATCGG CTTGAAATCG CGCCAGCTGT ACCCATTGAC 
ACCAAGAAGG CTGGCACTAT CAGTGGTACC AGCAATTCAA GAGAGGGCGA TATGCCTGGT 
GGGGAGCAAT TACAACAAGC ACGCGAAGAC ATTGCCAGTC GCGACGCTGA GATTCAAGAT 
TTGCGTTCCC GACTTATTGA TTTGGAACAA CTGCGCAAAA AACAGCAGCA ATTGATCGCG 
TTGAAGGACA GTGAGCTGGC AGCGGCTCAA CAGCATTTGC CAAAAACCCA GGGACATAGC 
AGGTTGGGCA ATGGGGCAAT GATCCTGTTA GGTGGTGCTG CTCTGCTGTT TATCTGCATG 
GTGTGGTGGT GGGTGAACCG CCGTCCCAAG CCTTCGCCGT TGCCTCATTT GCCATCACGT 
GAATTCGACT CGGAGGCATT GGTTGTTGCT TTTCCTCACA CTGCTGCTGT GTCGCGGAGT 
GATTTTTTAG AGATGCCTGA TCAGGTGGTG CGTGAGGGCG AACGCATGCA CGTTCCTGAC 
CTTACTCTTG ATCGTGTCTC GGCAGGTATG TATACCTCCG TCAATCCATC TGTTAAGCCT 
CAGACATTTG TCCAGGTGCA AGCTGCTAAT GTTCAAGCTG CTAGTGTTGC TGCGCAGCAA 
AGTCAGCCCC AGGCACAGCA GCCTGGCCCC CCATCAGGGG TGCGTGATCG TCTGGAACTG 
GCGGTTGCCT ATCTTGATTT GGGGGATAAG GAGACCGCGC GTAGTCTTTT GCGTGAAGTG 
GTGGTCACCG GAGACGATGT TGCACGTGCC GAAGCAGCAG CATTACTTAA TCAAATTGCA 
TAA 

 

Protein sequence

MGWLLPFAVC ASSNTDRIVV IRSTIPAAPV ILVFMKSMGK GVLSPVYGLT ALFLVLCSNA 
ALALGLGDIR VLSKPGQPLV AEIPVISNEA GELDDVRVAL ASPETFARVG LERPNGFLDD 
LQFQFSKDRH GRAVVRVTSN QSVQQKAINF LIDVEWKQGR LVREYSALID APNTAAAIAE 
PAINAPQVAS ANVIVRPAPA PSVPVPPPPP AVPVTAPTPF ISSVDEATDT ASADVGDATE 
TEGVGTVGTP AAPPSDAGPV TVQRGQTLSQ LASQLARQSG RTLDQTMLAM LRTNPSAFIG 
SNINLLKQGA VLRTPTQEAL SELGAAEAKA MVREQAAQWR QARASIPQPA ESWAASQSRA 
VAGPDTATDR LEIAPAVPID TKKAGTISGT SNSREGDMPG GEQLQQARED IASRDAEIQD 
LRSRLIDLEQ LRKKQQQLIA LKDSELAAAQ QHLPKTQGHS RLGNGAMILL GGAALLFICM 
VWWWVNRRPK PSPLPHLPSR EFDSEALVVA FPHTAAVSRS DFLEMPDQVV REGERMHVPD 
LTLDRVSAGM YTSVNPSVKP QTFVQVQAAN VQAASVAAQQ SQPQAQQPGP PSGVRDRLEL 
AVAYLDLGDK ETARSLLREV VVTGDDVARA EAAALLNQIA