Gene Xfasm12_0619 details

Gene Information

• Locus tag: Xfasm12_0619
• Symbol: ispF
• ID: 6120383
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: +
• Start bp: 680336
• End bp: 680839
• Gene Length: 504 bp
• Protein Length: 167 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 641648688
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_001775253
• Protein GI: 170729820
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGGGTT TGAATGTTCG CATCGGTCAG GGGTATGACG TGCATGCGTT TGGACCCGGT 
GATCATGTGA TGTTGGGTGG GGTGCTGGTG CCGCATCGTT GCGGTGTGTT GGCACACAGT 
GATGGTGATG TGATCTTGCA TGCGTTGTGT GATGCCATGC TTGGTGCGTT GGGGTTCGGT 
GACATTGGTC AGCACTTTCC ACCTTCCGAT GTACGTTGGA AGGGAGTAGA CAGTGGTGTC 
TTTGTGCGTC ACTGCAACCT GTTGCTGCGC GAACGTGATT GGTGTGTCGG TAATGTTGAT 
GCAACTGCAA TCTGCGAATC GCCGAAGATT GCTCCGTATG TCAATGCGAT GCGTGAGGGG 
ATTGCGCGCT TGCTTGAAGT GCAACCGGAG TGTGTCAGTG TAAAGGCTAC GACGAGCGAG 
GGACTTGGTT TTATTGGTCG CGGTGAGGGC CTTGCCGCTC AGGTCGTGGT ATTGCTGTAT 
CGCCTTAACG GTGTCGTGGT GTAG 

 

Protein sequence

MTGLNVRIGQ GYDVHAFGPG DHVMLGGVLV PHRCGVLAHS DGDVILHALC DAMLGALGFG 
DIGQHFPPSD VRWKGVDSGV FVRHCNLLLR ERDWCVGNVD ATAICESPKI APYVNAMREG 
IARLLEVQPE CVSVKATTSE GLGFIGRGEG LAAQVVVLLY RLNGVVV