Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_0571 |
Symbol | prpB |
ID | 6120334 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | + |
Start bp | 627784 |
End bp | 628680 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641648640 |
Product | 2-methylisocitrate lyase |
Protein accession | YP_001775206 |
Protein GI | 170729773 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2513] PEP phosphonomutase and related enzymes |
TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCACAT CTCTCCCCAT CCAGACACCA GGCCAATGTT TCCGTACTGC TTTAATGACC GAGCGCCCCT TGCAAGTGAT CGGTGCAATG AATGCCTACC ACGCACTACT GGCCCAACGT GCCGGTTACC GTGCCCTCTA TCTTTCCGGA GGCGGCGTCG CTGCCGGTTC CCTCGGCCTG CCAGACTTGG GAATCAATAC CCTAGAAGAT GTCTTGATCG ATGTACGCCG CATCACCGAT GTGTGTGATC TTCCCTTGCT CGTGGATATT GATACGGGTT TCGGTCCCAG CGCACTCAAT ATCGAACGGA CTATCAAGAC ACTGATTAAA GCCGGTGCTG CTGCGTGCCA CATTGAAGAC CAAGTAGCGG CAAAACGGTG CGGCCATCGT CCCGGAAAAG AGATCGTGTC CCTGAGCGAT ATGGCAGACC GGGTGAAGGC TGCTGCCGAT GCCCGCACCG ATGCAACCTT CTTTTTGATT GCCCGGACCG ATGCCATTCA GGCCGAAGGT GTGGAAGCGG CGATTGAACG CGCCCAGGCC TATGTCGAAG CTGGCGCTGA CAGTATTTTT GCCGAGGCCG TCTCCGATTT GGAGACCTAC CGACATTTTG TCGAAAGAAT CCGAGTCCCC GTGCTTGCCA ACATGACCGA ATTTGGTAAA ACCCCACTGT TGACCCGCGA GCAACTAGAG GCTGTTGGAG TTGCGATGCA ACTTTTCCCA TTATCCGCAT TCCGTGCCGC CAACAAAGCT GCTGAAACCG TGTATATGGC AATTCGCCGT GATGGCCATC AACAGGCTGT ATTGCCGCAC ATGCAGACCC GCGCCGAACT ATACGAACGC CTTGATTACC ATGCCTTCGA ACAGCGCTTG GATGCCCTGT CTGCCCGCAG CACCTGA
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Protein sequence | MSTSLPIQTP GQCFRTALMT ERPLQVIGAM NAYHALLAQR AGYRALYLSG GGVAAGSLGL PDLGINTLED VLIDVRRITD VCDLPLLVDI DTGFGPSALN IERTIKTLIK AGAAACHIED QVAAKRCGHR PGKEIVSLSD MADRVKAAAD ARTDATFFLI ARTDAIQAEG VEAAIERAQA YVEAGADSIF AEAVSDLETY RHFVERIRVP VLANMTEFGK TPLLTREQLE AVGVAMQLFP LSAFRAANKA AETVYMAIRR DGHQQAVLPH MQTRAELYER LDYHAFEQRL DALSARST
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