| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0568 |
|---|
| Symbol | |
|---|
| ID | 6120331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 621368 |
|---|
| End bp | 623206 |
|---|
| Gene Length | 1839 bp |
|---|
| Protein Length | 612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641648637 |
|---|
| Product | pathogenicity protein |
|---|
| Protein accession | YP_001775203 |
|---|
| Protein GI | 170729770 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0729] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCTGG AATGTGAGAT TTATCACTCT ATCCTACTGC CTCGGTATAC TGCGCAAATG
ATAAGACGCT TTATCCCGCC AATGTTGAGC TTATGGTTGC TCTTCGCTTC TTTGGCTCAG
GCGAACGCAA CCGTAGACAA AATCCAGATC AAAGGTTTGG ATAAAGGTGA TGACGTTGAG
ATGATGAAAA ACATCACTGT CTCGTTATCG TTGTATAGCG TGGTTGGTAA GGAGCAGGGC
GAATCCCGGC TGGAATACCT GTTCAGCCAA GCCGAGTTCC AGACCCGCCA AGCCTTGGAG
CCCTTTGGCT ATTATGCTCC CGCCATTCGC ATTGATGCCC CGCGCCAGAA TGATCACATC
ACCGTGGTTA TTTACGTGGA CAAAGGAGAG CCGGTCCGGG TACGTCAGGC GCACGTTGCG
ATGACAGGAG CCGCCGCGCA GGACCATTAT CTTCAGCGTG ACCTGGAAGA TTTCAAGCCT
AAGCTTGGCG AAATATTCAA CCATCCCACG TATGAAGCCA GCAAGGTTCG CATCACCCGG
CGCTTGGCTG AGCGAGGCTA TTTCGATGCC GATTTCACCC GCCGTCAGGT CGAAGTGACC
CGTGCCACGT ATGCAGCAGA CATTGATTTG ATCTGGGAAA GCGGGCGCCG CTATGACATG
GGGCCCGTTC GCTTCCATTA CGACTATTTC CACGAAGGGC TATTTAATCC ACTGGTGTAC
TGGGACGAAG GTAGCTATTT CCACGAAGGC AAGCTTGATC GCCTGCGTGA GTCACTGACC
AAATTGGACT ATTTCAGCAG CATTGATATC CAACCCAAGC CCGAGGAAGC CGATTCTGAA
GGCAATGTTC CCGTTGATGT CAAGCTGGAA CGCGCCAAAA GCAAAATCTA CACGGCGGGC
ATCAGTTATG GCAGCGAAAG TGGTGCCGGT CTGCGTGCTG GTGTTGAGCG GCGCTACATG
AATGCGCGTG GACACAAAAT GAATGCACGA TTGGACTATG CCCAGAATCG CAAAAGCCTC
ACCACGGCCT ATCAAATCCC CGCGTTCAAA TGGCTGGATG GGTGGTACAT ATTCTCCGCA
CGTGCCTATG ATGAGCAGAC CCAGTACATC GACTTGCGTA ACGTGAAGCT ATCGGCTGCA
CGTAGCGGCC AGATCAACCG ACATTTGACC GCCACCGCCT CACTGAACGC GCTACGGGAG
CGTTGGCGTT ATGGGGGCGA TGACGGCACC AATACAGTGG CTTACCAGCA GTCCACGCTG
GTCTACCCAC AATTGGAAGC CAGCTATGTT GATGTTGACG ATGCTACCTT CCCTCGCAAT
GGGAGCGTAG CCACAGTGCT CCTGCGTGGT GGTGCCAGTG CATTGGGTTC CAAAAGTAAC
TTTACCCAGC TTCATGGCCA ACTGCGTTGG TTTCATGGAT TGGGGTCCAG CAGCCGCCTC
ATTTTACGTG GAGAGGCCGG TACCACCTGG GCCAGCGATT TGGTCGCAAT GCCGCCAAGC
TTGCGTTTCT TTGCTGGAGG CGTTAACAGC ATTCGTGGTT ACGCTTTCCG CGAGGTTGGT
CCACGTACTG CCAAACCGGA TGCCTTCGCA CTCGGTGCCA AACATGTTTT CAGTGCTGGC
GCTGAATATG AGTACTACTA CAAAGGAGGA CCCTTTGGTG GCGCCGTGTT CGTGGATAGC
GGCAGTGCGT TCAATCGCTA TCCGGATTGG CATACCGGCG TTGGTATCGG CTTGCGTTAC
CGCTCCCCGG TAGGTCCGGT ACGTGTGGAT ATTGCGCGTG GCTTGAACAG CCCCGATTCC
AAGATTCAAC TGTATATCGA CATTGGGGCC AATCTGTGA
|
|---|
| Protein sequence | MLLECEIYHS ILLPRYTAQM IRRFIPPMLS LWLLFASLAQ ANATVDKIQI KGLDKGDDVE
MMKNITVSLS LYSVVGKEQG ESRLEYLFSQ AEFQTRQALE PFGYYAPAIR IDAPRQNDHI
TVVIYVDKGE PVRVRQAHVA MTGAAAQDHY LQRDLEDFKP KLGEIFNHPT YEASKVRITR
RLAERGYFDA DFTRRQVEVT RATYAADIDL IWESGRRYDM GPVRFHYDYF HEGLFNPLVY
WDEGSYFHEG KLDRLRESLT KLDYFSSIDI QPKPEEADSE GNVPVDVKLE RAKSKIYTAG
ISYGSESGAG LRAGVERRYM NARGHKMNAR LDYAQNRKSL TTAYQIPAFK WLDGWYIFSA
RAYDEQTQYI DLRNVKLSAA RSGQINRHLT ATASLNALRE RWRYGGDDGT NTVAYQQSTL
VYPQLEASYV DVDDATFPRN GSVATVLLRG GASALGSKSN FTQLHGQLRW FHGLGSSSRL
ILRGEAGTTW ASDLVAMPPS LRFFAGGVNS IRGYAFREVG PRTAKPDAFA LGAKHVFSAG
AEYEYYYKGG PFGGAVFVDS GSAFNRYPDW HTGVGIGLRY RSPVGPVRVD IARGLNSPDS
KIQLYIDIGA NL
|
|---|
| |