| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0541 |
|---|
| Symbol | |
|---|
| ID | 6120948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 591802 |
|---|
| End bp | 592512 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641648611 |
|---|
| Product | ribosomal small subunit pseudouridine synthase |
|---|
| Protein accession | YP_001775177 |
|---|
| Protein GI | 170729744 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.504782 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAC TCAAGTACAT TGCTAATCTT GGTTATGGGA GCCGTAAAGA GGTTGCCCGA
ATATTTAGAG AAGGCCGTAT CACGAATGGT GAAGGTGAAG TGTTGTATGC CGATGACCAT
GTACAACACA CTGCGGTTCG TTTTGATGGT GAACCGTTGG ATCCGCCGCC TGGATTAATG
GTGATGCTGC ATAAGCCTTC TGGTTATATT TGTTCGACCA AGGACGCGGG GCGCTTGGTG
TATGACTTGT TGCCTGCCCG TTTCCGCTTG CGCTCCCCGT TGCTTTCCAC GGTCGGTCGG
CTTGATGGGG ATACCAGTGG TCTGTTGTTA CTCACGGATG ATGGTGCACT GCTGCACCGG
ATGATCTCGC CTAAGACACA TCTTCCTAAA GTCTATGAGG CGACACTCGT GCAAGCGTTG
CGGGGAGACG AAGCAACGTT GTTTGCCAGC GGCACTCTCC TGTTGGATGG AGATACAAAG
CCGTTGCAAC CAGCAGTGTT GGAAGTACTG GGACCATGCC AGGTACGGTT GACGTTGTAT
GAGGGGCGTT ATCACCAAGT GCGACGAATG TTTGGTGCAA CCGGAAACCG TGTCAACACG
TTGCATCGCA GTGCTATCGG TGGCTTAGTC CTGGATGGAC TTCCGGAAGG GCAGTGGCGT
GTGCTTGAAG CCCAGGATCT TGCGATGCTG TTTTCACAGG GGAGCCGATG A
|
|---|
| Protein sequence | MKLLKYIANL GYGSRKEVAR IFREGRITNG EGEVLYADDH VQHTAVRFDG EPLDPPPGLM
VMLHKPSGYI CSTKDAGRLV YDLLPARFRL RSPLLSTVGR LDGDTSGLLL LTDDGALLHR
MISPKTHLPK VYEATLVQAL RGDEATLFAS GTLLLDGDTK PLQPAVLEVL GPCQVRLTLY
EGRYHQVRRM FGATGNRVNT LHRSAIGGLV LDGLPEGQWR VLEAQDLAML FSQGSR
|
|---|
| |