Gene Xfasm12_0511 details

Gene Information

• Locus tag: Xfasm12_0511
• Symbol: rpsE
• ID: 6120914
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: +
• Start bp: 556234
• End bp: 556773
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 641648580
• Product: 30S ribosomal protein S5
• Protein accession: YP_001775150
• Protein GI: 170729717
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 0.478223
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGAAG AACGTTCACA ACGAAGTCGA GATCGTTCTC GTGAAGAAAA AATCGATGAT 
GGCATGATAG AAAAATTGGT TGCTGTCAAT CGTGTCAGTA AAACAGTTAA GGGTGGGCGT 
CAATTTACTT TTACTGCTTT GACTATTGTA GGTAACGGTG AAGGTAGTGT TGGCTTTGGT 
TATGGAAAGG CGCGTGAAGT TCCTGTCGCT ATTCAAAAAT CAATGGAGTA TGCTCGTAAA 
AGGATGGCTA ATGTGAGTTT AAATAACGGT ACTCTTTGGC ATCCTGTGAA AGCTAACCAC 
GGTGCTGCTT CTGTCTTCAT GAAGCCTGCA TCGGAGGGTA CAGGTGTTAT TGCTGGTGGT 
GCTATGCGTG CTGTATTAGA GGCGGTTGGC GTGAAAGATG TTCTTGCTAA AGCTATTGGT 
TCCCGTAATC CGATTAATCT AGTGCGTGCT ACGTTAAAGG GTTTGGAGGA CATGCAATCA 
CCGACTCATA TTGCTCTCAA GCGTGGTAAG AATGTTAGAG ACTTTAGCCA TGGTTCATGA 

 

Protein sequence

MAEERSQRSR DRSREEKIDD GMIEKLVAVN RVSKTVKGGR QFTFTALTIV GNGEGSVGFG 
YGKAREVPVA IQKSMEYARK RMANVSLNNG TLWHPVKANH GAASVFMKPA SEGTGVIAGG 
AMRAVLEAVG VKDVLAKAIG SRNPINLVRA TLKGLEDMQS PTHIALKRGK NVRDFSHGS