| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0340 |
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| Symbol | |
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| ID | 6120643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | + |
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| Start bp | 390256 |
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| End bp | 393105 |
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| Gene Length | 2850 bp |
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| Protein Length | 949 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641648415 |
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| Product | serine protease |
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| Protein accession | YP_001774989 |
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| Protein GI | 170729556 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000485293 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACGA TATTTGCTGC CAGGACGATC TTGGCATCCG CATTGGCTGC TGCTTTGAGT
GCCTGCGGCG ATCCATTAGT TCGCTCAGAG ACACCGACGA CACCGACGAC ACCGACGACT
CCGACGCCAT TGCCTGATTT GGATCCGGCG TTAGCTGCCA AGTTTCGCGC GCACCTAGAT
GTTACGAATA CAGAACCCGC TCATACACTT GGCTTTACTG GCAAGGGTTA CATGATTGGT
GTGGTCGACT CCGGTGTGAA TCCTGACCAT GTCACGTTGC AGGGGAGGGT GATCCGCAAT
AATGTGTATG TGGATTATCA AGATCCCTCT AGTCCACATG ATGTTGATGG CCATGGCACC
ACCGTGGCAC AGCTTGCTGC GGGTAGGCCG TTTGGCGACT TTCCCGGTGG TATCGCACCA
GGTGCGACTA TCTTCTCAGC GCGCGTCTTC TCGTCTGCAG CAGAAAGTGC AAAAGAAGAT
CCAATAGGCG GGAACTTTTT TGAAGGAGAA GCAGCGCAGC TAAAACGCGT CAATGCCGAC
ATGATTGCCG CAGGAGTGCG TATCCAAAAC AACTCCTGGG GATATGAGAG TGATGACTCA
AATGGTGAGC CAATATGGAC AAGTCCAATC ATCACTGGTT TGTTCGTGAA TGCATACCGT
GATTTAGTGC TGAATAACAA TGGCTTAATG ATATTCGCCA GTGGTAACGG AAAACAAACA
CAACCGGGTC AACTTTCCAG ATTGCCGAGC TTGCCCACTG TGGAGGGGGG GGCATCGCCT
GCCGACCTGG AAAGGGGATG GTTAGTGGTC GCTGCACTGG ATAGTTTCGA TCATCCCGAC
CAATTGGCTT CGTACTCGAA CCATTGCGGC ATCGCAATGC ACTATTGCTT AGCTGCACCA
GGTGATGTCA TTACAGTCAA TAGCAGCGTG ACCAACAGCT CTTCTGTTAG TGATAAATAT
TATGTGGAAC AGGGGGGCAC CTCATTTGCA GCGCCGTTGG TCTCTGGTGC AGCGGCATTG
GTATGGGAGG CATTTCCCTA TTTCAGCAAC GACCTGGTGC GGCAGACCCT GCTTGGCACG
GCGACTGATC TTGGTGCCCC TGGCGTGGAT GAAGTCTTCG GCTATGGTGC ACTGAATGTG
GGTAAAGCAG TGCTGGGCCC GGCTAAGTTC GATTGGGGTG ATGTCCAAGT CAGCTTCGAT
GACAGGCGTT CCACCTGGGG CAATGACATC ACCGGCAGCG GCGGCTTGAT CAAGCGTGGT
ACCGGAACAC TGATGCTTGG CGGCAGCAAT AATCAATACA CCGGAGCCAC CCAAGTCCTG
GGAGGTACAT TGCAAGCGTC CAGCTTGGGT GCATCCGCAG TTAGCGTTGC TAATACTGCG
ACGTTGATTG GTAGCGGTCG CTTCGGCGGT GCGGTGAGCA ATGCCGGCAC CCTGGAGCTT
GGGAAGGATG GGCTCAAGGT GCAGGGTGAT TACACCCAAT TGGAGACAGG GCGTCTTGCA
CTGTACGTTG GAGATCAGCT GAGCGTGGCC GGTAATGCCA CCCTGAAAGG GGGGGAACTC
CAAGTGTTGG GTAAACGTGA TTATGTGACC TTCAATACTT CCTACAGCGT ATTGCAGGCT
GATGGTAGTT TGACCGGCAC GTTCTCGCAG TTGACCTGGG GTCCGGCTGT GCTGCTTGGA
GAAGGTCGTC TGACCTACGG CGCTAACAAT GCCTACGTGA CCCTGCAGCG TCTGAATGTC
AGCGCGGCGG CACAGGCCTT GGGGATCGTT GATAGAGTTG CGCAGGCCTC TGCCCAGCGT
GTTGAGCAGG CATTTCGTGC AATTGATGCA CAGCAGGCGC AAGGCCGCGG TGCGTTGCCC
ACCAGTTTTA TTGGGGCGGC GGCGGCATTG CAACAGTCCA GTAGCGCGGC AGTGGCGGCG
GGTTCGTTGC AGAGTTTGTC GGGGCAATCG CATGTTGCGG CGGCGGCGGC TAGCCTTGAT
GCAATCGATT TGGGGCGCCG CAGTTTGGCG ACGCGTCTAG ATGTGCTTCG TTCGGGCGAG
CGTATTGTGA CGTGGCATCA AGCCTTGGGT GGTCCGGGGC AGAATGGTGC GGCTAGCGGC
ACCTTCTCCC TGTCTGGCTG GTTGGTGGGA CATGATGCGC AACTTGCCTC CGGTGACATT
GTGGGTGTTG CTTTTGGTCA GGCCGATAGC AGCCCCTCCG GTAGTGCCTC TGGGTTGCGA
GGGATAGACA GACAAGTGCA AGGGCGTGTG TATTTGCAGC GCACCCAGGG GCCCTTGTAT
GTTTTGGGGC AGCTTGGTTT TGGTAGTTTC CAACGTCGTC TGGACCGGCA GTTGCAACTG
GGTGATTGGA ACGATTGGAC ATCCAGTCGC TACAGCGGTC AGTTTTGGAG TGGCAGTGTG
GAGGCTGGCT ATCACTGGCG TCAGGGTTCC TTGGCATTGA CCCCGTATCT TGGTCTGGAT
CAAACGCAGT TGCGGACGGA TGGATTCCGT GAGCAGAGTG GCTCTGGCTT TGGCTTACAG
GTGCAGTCCG CCCAAGCGAC GCGGAGTCAG TTACTGGCCG GTGTGCGTAC GGAGTGGCGC
TGGGGTGGCG TGCAATGGCG TGGTTATGGT GAATGGCAGC AGACGTTGCG TCAGAGTGGT
TTGAATCCAC AGGCTAGCTT TACAGCGACT TCGTCGTGGA CGCCGTTGGT GGCTTCGTCC
TGGCCTGGTC GTTCTGGGGG TGTGCTTGGG TTATCGATGG TCTTGCCTGT CGGGGTGACC
GCAGGTCTGT GGACCATGGG GTTAGAGCAT TACTTTGGTA CACGTAGCCG TGGGGAGAGT
CTTGGTCTGC GTTACCAGCT TGGTTTTTAG
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| Protein sequence | MKTIFAARTI LASALAAALS ACGDPLVRSE TPTTPTTPTT PTPLPDLDPA LAAKFRAHLD
VTNTEPAHTL GFTGKGYMIG VVDSGVNPDH VTLQGRVIRN NVYVDYQDPS SPHDVDGHGT
TVAQLAAGRP FGDFPGGIAP GATIFSARVF SSAAESAKED PIGGNFFEGE AAQLKRVNAD
MIAAGVRIQN NSWGYESDDS NGEPIWTSPI ITGLFVNAYR DLVLNNNGLM IFASGNGKQT
QPGQLSRLPS LPTVEGGASP ADLERGWLVV AALDSFDHPD QLASYSNHCG IAMHYCLAAP
GDVITVNSSV TNSSSVSDKY YVEQGGTSFA APLVSGAAAL VWEAFPYFSN DLVRQTLLGT
ATDLGAPGVD EVFGYGALNV GKAVLGPAKF DWGDVQVSFD DRRSTWGNDI TGSGGLIKRG
TGTLMLGGSN NQYTGATQVL GGTLQASSLG ASAVSVANTA TLIGSGRFGG AVSNAGTLEL
GKDGLKVQGD YTQLETGRLA LYVGDQLSVA GNATLKGGEL QVLGKRDYVT FNTSYSVLQA
DGSLTGTFSQ LTWGPAVLLG EGRLTYGANN AYVTLQRLNV SAAAQALGIV DRVAQASAQR
VEQAFRAIDA QQAQGRGALP TSFIGAAAAL QQSSSAAVAA GSLQSLSGQS HVAAAAASLD
AIDLGRRSLA TRLDVLRSGE RIVTWHQALG GPGQNGAASG TFSLSGWLVG HDAQLASGDI
VGVAFGQADS SPSGSASGLR GIDRQVQGRV YLQRTQGPLY VLGQLGFGSF QRRLDRQLQL
GDWNDWTSSR YSGQFWSGSV EAGYHWRQGS LALTPYLGLD QTQLRTDGFR EQSGSGFGLQ
VQSAQATRSQ LLAGVRTEWR WGGVQWRGYG EWQQTLRQSG LNPQASFTAT SSWTPLVASS
WPGRSGGVLG LSMVLPVGVT AGLWTMGLEH YFGTRSRGES LGLRYQLGF
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