Gene Xfasm12_0193 details

Gene Information

• Locus tag: Xfasm12_0193
• Symbol: secD
• ID: 6121183
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: +
• Start bp: 230552
• End bp: 232396
• Gene Length: 1845 bp
• Protein Length: 614 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 641648278
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001774856
• Protein GI: 170729423
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTGAAT TACCCCGTTG GAAATATGTT CTTATTTTTG TTGTGCTTGT GTTGAGCACG 
CTGTACGCGT TACCAAACGT GTATCAAAAA GATCCTTCCG TGCAGATTAC CGCCAATCGA 
GGCGGCCATA TTGACGATGC ATTCCGCCAG CAGGTGATGA GTGATCTGCA AGCATCCGGC 
ATTGTGCCCA AGGCGGTGAC CAAGGACGGG GAGAGCCTTA TGGTGCGCTT GATGTCGTTG 
GAGATGCAGA CCCGTGCAAG CGATGTGTTG CGGGCTAAAG TCGGTGAGAA TTACACCGTT 
GCATTGAATC TCGCTTCCAC TGTGCCAGAT TGGTTGGCTA AGTTGGGTGG GCGACCAATG 
GTGTTAGGTT TGGATCTGGT TGGTGGCGTG CATTTCGCGC TTCAGGTGGA TCAGAAGGCC 
GCTCTGAATA AACGTATGGA TGCTTTTGTT GAGGAGGTAC GTTCGACGTT GGGTAGCAAC 
CGTATTGGCT TCCGCATGGT CGAACGCCGT CCGGACAACA CGATTCGAGT GACGTTTGAT 
GATGATGCTC ATCTCAATGA AGCACGTATG GTGTTGTTTA AGGAGCAAGT GGGGCTGAGT 
TATTCGGTAT CCGGAAATAC CTTGATTGCT CGTGTTTCTG AGAATGAGTT GCGTCAGATT 
GCCAGTGGTG CAGTTGAGCA AAATCTGACG ACTCTGCGTA ATCGCATCAA TGAATTAGGC 
GTGGCCGAAC CAATTATCCA ACGCCAGGGG GATGATCGTA TTGTTGTTGA GTTGCCTGGT 
GTTCAGGATA CTGCTGAGGC TAAACGTCTG ATAGGTGCGA CTGCTACGCT GGAGTTTCGG 
GGTGTGGTCG ACGGGGATGC CTATGAGGCA GTCCGTACTG GGAATGTTCC TCCTGAGGCC 
AGGGTGTATT ACATACGCGG CACCAACCAG CCAGTTTTAT TGAATAAGCG TGTGATTGTT 
TCTGGTGATG AGATGGTGAA TGCCACTGTC GGTGTGGATG AGAACGGCAT GCCAGCGGTC 
AATGTCACTC TCAGTAATGT TGCTGGCCAG CGTATGTTGG ACTACACCCA GCGCAACCTT 
TACAAGCTGA TGTCTGTGGT CTACATCGAG CGTATTCCGA CTGTGAGCAT GGTTGATGGT 
AAGGAAGTGC GTGGCGTGCG GTTGAAGGAA GAGGCATTGT CCCCAACCCG GATTGCTGGG 
GTATTTGGAA AAAACTTCCG TACCACCGGG TTGGAGAAGA CTGAGGCTGA AAATCTGTCT 
AAATTGTTGC GCGCTGGTTC GTTGGCTGCA CCGATGGATT TCGTTGAGGA ATATGTGATC 
GGTCCTAGTC TGGGTGCAGA GAATGTAGAA CGTGGTGTGA CTGCAGTGGT GTTTTCTTTC 
CTATTCACCC TGGTGTTTTT CACCATCTAT TACCGCATGT TTGGTGTGAT TACTTCATTG 
GCATTGCTGT TTAATCTGTT GATTGTGGTA GCGGTGATGT CGCTGTTTGG TGCAACCATG 
ACTTTGCCGG GTTTTGCCGG GTTGGCGCTG TCGGTCGGGC TTTCGGTGGA TGCTAACGTG 
TTGATCAACG AGCGTATCCG TGAGGAGTTG CGTCACGGGA TGCCTCCGAG ATCGGCGATT 
GTGGCCGGTT ACGACAAGGC GGGTAGCACG ATTCTTGATG CCAATTTGAC CGGACTGATT 
GTTGGTGTTG CCTTGTATGC TTTCGGAACC GGTCCTTTGA AGGGCTTTGC GTTGACTATG 
ATTATCGGGA TTTTCGCCTC AATGTTTACT GCGATTACTG TATCGCGTTC GCTCTCTGCG 
CTGATTTACG GTACGCGCAA CAATCTCAAG TCTTTGGCTA TCTGA 

 

Protein sequence

MLELPRWKYV LIFVVLVLST LYALPNVYQK DPSVQITANR GGHIDDAFRQ QVMSDLQASG 
IVPKAVTKDG ESLMVRLMSL EMQTRASDVL RAKVGENYTV ALNLASTVPD WLAKLGGRPM 
VLGLDLVGGV HFALQVDQKA ALNKRMDAFV EEVRSTLGSN RIGFRMVERR PDNTIRVTFD 
DDAHLNEARM VLFKEQVGLS YSVSGNTLIA RVSENELRQI ASGAVEQNLT TLRNRINELG 
VAEPIIQRQG DDRIVVELPG VQDTAEAKRL IGATATLEFR GVVDGDAYEA VRTGNVPPEA 
RVYYIRGTNQ PVLLNKRVIV SGDEMVNATV GVDENGMPAV NVTLSNVAGQ RMLDYTQRNL 
YKLMSVVYIE RIPTVSMVDG KEVRGVRLKE EALSPTRIAG VFGKNFRTTG LEKTEAENLS 
KLLRAGSLAA PMDFVEEYVI GPSLGAENVE RGVTAVVFSF LFTLVFFTIY YRMFGVITSL 
ALLFNLLIVV AVMSLFGATM TLPGFAGLAL SVGLSVDANV LINERIREEL RHGMPPRSAI 
VAGYDKAGST ILDANLTGLI VGVALYAFGT GPLKGFALTM IIGIFASMFT AITVSRSLSA 
LIYGTRNNLK SLAI