| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0138 |
|---|
| Symbol | |
|---|
| ID | 6121123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 162857 |
|---|
| End bp | 163657 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641648221 |
|---|
| Product | DNA-(apurinic or apyrimidinic site) lyase |
|---|
| Protein accession | YP_001774805 |
|---|
| Protein GI | 170729372 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0708] Exonuclease III |
|---|
| TIGRFAM ID | [TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.287048 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGAATTT CCAGTTTTAA TGCCAATGGG TTGCGATCGG CTCTTAGTAA GGGTTTTTTT
GGTTGGTTTT CTACTCAGGA CATTGATGTG CTGTGTGTGC AGGAAACCAA GGCGCAGAGG
CACCAGTTAG TTGGACCGGA TTTTTTTCCG GCTGGCTATC ATGTGTGTTT TCGGGATGCG
ACGATTAAGA AAGGTTATAG CGGGGTGGCG ATTTACAGTA GGTGTGAGCC GGATGAGCTT
CGCACTACGC TGGGTTGGGC CGAGTTTGAC GAAGAGGGCC GTTATGTGGA GGCGCGATTC
GGAAATTTGA GTGTGGTTTC GTTTTACATT CCTTCTGGTT CTTCAGGGGA GAAGCGTCAG
CATTATAAGT TCGAGGTCAT GCGTTGGTTG CGTCCGATTT TGTGCGAGTG GTTGCTCAGT
GGTCGGGATT ATGTGTTGTG TGGTGATTGG AATATTGTGC GTAGTGCATT GGATATCCGT
AATTGGAAAT CTAATCAGAA AAATTCCGGT TGTTTGCCGT TGGAGCGCGA TTGGCTCAAT
GGTTTATGTG CCGATTCTCT ACATGATGTT AATTCGGCTC AGGGGCGAGG CTGGGTTGAT
ACTTACCGTG TGTTGCATCC GCAAGGTGAG GATTACACGT GGTGGAGTAA CCGCGGCGCG
GCGCGCGTTA ATAATGTGGG ATGGCGGATT GATTATCAGT TTGTTTCTCC AGGTTTGCGT
GAACGTGTGT CGCGTTGTGC GATTTATTGT GAGCAACGTT TTTCAGATCA TTCCCCTTAC
ACTGTGGAGT ATGTGTTGTG A
|
|---|
| Protein sequence | MRISSFNANG LRSALSKGFF GWFSTQDIDV LCVQETKAQR HQLVGPDFFP AGYHVCFRDA
TIKKGYSGVA IYSRCEPDEL RTTLGWAEFD EEGRYVEARF GNLSVVSFYI PSGSSGEKRQ
HYKFEVMRWL RPILCEWLLS GRDYVLCGDW NIVRSALDIR NWKSNQKNSG CLPLERDWLN
GLCADSLHDV NSAQGRGWVD TYRVLHPQGE DYTWWSNRGA ARVNNVGWRI DYQFVSPGLR
ERVSRCAIYC EQRFSDHSPY TVEYVL
|
|---|
| |