| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0121 |
|---|
| Symbol | |
|---|
| ID | 6119832 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 143527 |
|---|
| End bp | 145413 |
|---|
| Gene Length | 1887 bp |
|---|
| Protein Length | 628 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641648206 |
|---|
| Product | arginine decarboxylase |
|---|
| Protein accession | YP_001774790 |
|---|
| Protein GI | 170729357 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
|---|
| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.183445 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTGGT CTCAAGATCT GGCCCACAAG ACGTATTCGA TCCGGCATTG GGCTGATGGG
TATTTCGAGG TGAACGATGC TGGGCACATG GTGGTGATGC CGCTCGGTGG GGATGGTGTG
CGGATCTCGC TCCCAGAGGT TGTGGATGCT GCGCGTGCCG CCGGTGCCAA GTTACCGCTG
CTGCTGCGTT TCCCTGATAT TTTGCGGCAT CGTCTGGGTA AATTGCAGGC GGCGTTCGTT
CAGGCACAGT CCGAGTGGGA GTATGCGGGT GGTTACACTG CTGTTTACCC GATTAAGGTC
AATCAGCATC GCGGTGTGGC GGGTGTTCTG GCGAGTCACC AGGGGGATGG TTTCGGTTTG
GAAGCCGGTA GCAAACCAGA ATTGATGGCG GTGTTGGCGT TATCGCGTCA GGGTGGGTTG
ATTGTTTGTA ATGGGTATAA GGATCGGGAG TACATCCGTC TTGCGTTGAT CGGACGCAAG
CTTGGTTTGA AGACTTTTAT TGTGATTGAG AAGCCGTCTG AATTGAGAAT GGTGCTTGAG
GAGGCTAAAA CGCTCGGTGT ATTGCCTGGT TTGGGCGTCC GGGTGCGTTT GGCGTCGTTG
GGTGCCGGAA AATGGCAGAA CAGCGGTGGC GATAAGGCAA AGTTCGGTTT GTCGCCGCGC
CAAGTGTTGG ATGTATGGAA GGTGTTGCGT GGTACTGAGT ATGCCGATTG TTTAAATGTG
ATGCATTTTC ATATGGGGTC GCAGATCTCC AATGTGCGCG ATATCGCTAA GGGGATGCGT
GAGGCGACCC GTTACTTTGT CGAGCTTTCG CGCTTGGGTG CGAAGATCAC GCATGTGGAT
GTTGGTGGCG GTCTTGGCAT TGATTACGAG GGCACGCGTT CGCGTAGTGA CTGTTCGATC
AATTATGGTT TGCAGGCGTA TGCCAGTCAT ATCGTGCAGC CGCTGGCAAG TGCGTGTGAG
GATTATGATT TGGTGCCGCC ACGCATTGTC ACGGAGTGTG GTCGTGCAAT GACGGCGCAT
CATGCGGTGC TGATCGCTAA TGTGACCGAG GTCGAAGCGG TGCCGGAGGG TCGGGTGCCA
GGGTTGTGTG ATGATGAGCC GGCGGTGGTT CGCCACATGC GCGAGATTTA CGGGGAGTTG
GATGCGCGTC CGGCAATAGA GTTGTTTTAT GAAGCACAGC ACTTTCATGC TGAGGGGTTG
GCGGCTTACA CCCTCGGGCA GATTGATTTG GTGCATCGCG CACGTATTGA TGATTTGTTT
TATGCGATTT CGCATGGGGT GCGGGAGCGT CTCAGTCACG AGGAGAAGAG TCACCGTCCG
GTGTTGGATG AGCTGAATGA GCGCTTGGTT GATAAATATT TTGTCAATTT CAGTGTGTTT
GAGTCGATTC CGGATGTGTG GGCTATCAAT CAAATTTTTC CGATTGTCCC CATTGAGCGT
TTGAACGAGG CACCGACCCG ACGTGGTGTG GTCTGTGATT TGACCTGCGA TTCAGATGGT
ACGGTCAAGC AGTATGTGGA AAACGAGAGT CTGGACAGTG CGTTGCCTCT GCATGTGTTG
CGTCATGGCG AGGCTTACAG GATTGGCTTT TTCCTTGTGG GTGCTTATCA GGAAATCCTT
GGCGATATCC ATAATTTGTT TGGCGATACC GATGCGGTTG AGGTTGCAGT CGACGGCAGG
GGGTATCGTA TTGCGCAGCA GCGTTGTGGT GATACGACCG ATGTGATGTT GGACTATGTC
GGTTATGCGC TTGATGAGGT GCGCAGGGTT TATGCGCAAC GTATTACGGC AGCGGGGATG
TCTGCTGCGG AGTCCAAGGC ATTGAGCGAT ATGTTGGAAG CCGGTCTGAC GGGTTATCCC
TATTTGTCAG ATGTGCCGCT GGAGTGA
|
|---|
| Protein sequence | MTWSQDLAHK TYSIRHWADG YFEVNDAGHM VVMPLGGDGV RISLPEVVDA ARAAGAKLPL
LLRFPDILRH RLGKLQAAFV QAQSEWEYAG GYTAVYPIKV NQHRGVAGVL ASHQGDGFGL
EAGSKPELMA VLALSRQGGL IVCNGYKDRE YIRLALIGRK LGLKTFIVIE KPSELRMVLE
EAKTLGVLPG LGVRVRLASL GAGKWQNSGG DKAKFGLSPR QVLDVWKVLR GTEYADCLNV
MHFHMGSQIS NVRDIAKGMR EATRYFVELS RLGAKITHVD VGGGLGIDYE GTRSRSDCSI
NYGLQAYASH IVQPLASACE DYDLVPPRIV TECGRAMTAH HAVLIANVTE VEAVPEGRVP
GLCDDEPAVV RHMREIYGEL DARPAIELFY EAQHFHAEGL AAYTLGQIDL VHRARIDDLF
YAISHGVRER LSHEEKSHRP VLDELNERLV DKYFVNFSVF ESIPDVWAIN QIFPIVPIER
LNEAPTRRGV VCDLTCDSDG TVKQYVENES LDSALPLHVL RHGEAYRIGF FLVGAYQEIL
GDIHNLFGDT DAVEVAVDGR GYRIAQQRCG DTTDVMLDYV GYALDEVRRV YAQRITAAGM
SAAESKALSD MLEAGLTGYP YLSDVPLE
|
|---|
| |