Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_0063 |
Symbol | |
ID | 6120572 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | - |
Start bp | 78765 |
End bp | 81470 |
Gene Length | 2706 bp |
Protein Length | 901 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641648151 |
Product | outer membrane usher protein precursor |
Protein accession | YP_001774736 |
Protein GI | 170729303 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0335545 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGC AGGAAATATC GCAACGGAGG AAGGTTGGCT CCCTTCAGCT CAGTAGCGTG AAATTTGTCA CAGAATCCGA GATCGATTCC AACCGTAAGC TGATGGCACC CGAGCTGGAT TTAACACAAA TCAGAGGGCG CTATTTCAAG CAACGCGTGT TGGTCGCTGC AATCGCTTCG ACTTGCACAC TAATGATGTC AAGATTGGCT TGCGCGGAAA CGGAGCCTGA TAATCTTGGA CAGCGCATGC TGGTGGCTAA AGCGGATAAC ACCGCGCCAC AACGTGTAGC GCAAACGGCA AATTTCAACA ATAGTTTTCT GGTTGGCCAA GCGCGTTCCG TTGACTTAGG AATGTTTTCC CGAGGCAATC CTGTTATTGC AGGCCTCTAC CGTGCTGACC TTTATGTAAA CGGCCAATGG AAAGGCCGGC GTGATATGGA ATTTCGTAAT ACTAAGGATG ACAAGGAAGC TGTCACTTGC ATGACGCTCG CCATGCTGGA TGAACTCGGC ATTGATACAT CGGCGCTAAC AGACTCAGCG GCTGACATGC AGGCATGCAA AACCATCGAC CAATGGCTGC CGGATGCCTA TGCACGTTTC GATGTAGCCA CTCAGCGCTT GGACGTAAGC ATCCCACAAG CCGCTATGCG ACGCTCAGCA CGTGGCTATG TCAGCCCATC ACTCTGGGAT CATGGTGTCA ATGCGGGATT CATCGGCTAT GCCTTCAACT GGTATGGTGG CCGCAATGCA AATGCAATAA ATAGCAGACG GCGTAGTGAT TCAGCCTATC TTGGAATCAA CAGCGGCTTG AATCTAGGCG ATTGGCAATT TCGCCATAAT TCCAGTTACA GCTGGCATTC CAATGAAGGA TCGCTGTGGC AGAACATTTC CACTTACGCA CAACGCGCAT TTCCGAACAC AAGTAGCATG CTGACAGTAG GCGACGCCTA CACCAGCGGC GAATTATTTG ATTCTATCGG TTTCCGTGGT ATCAACTTGG CAACCGATGA CCGCATGTTG CCAGACTCGT TACGTGGCTA TGCGCCTATC GTCCGTGGTA TCGCGCAAAG TAATGCGCGT GTGGAGATAC GCCAGAACGG CCAGTTGATC TACAGCACCA CGGTTGCGCC CGGGGCGTTC GTCATCGACG ATCTATATCC CACCGGCTAT GGAGGTGACT TACAGGTCAC GGTCTATGAG ACCGACGGCC GCCAACAGCA GTTCAGTGTC CCCTATGGGT CTGTACCGCA AATGCTCCGA GCGGGGTCGC AGCGGTACAG CCTAACAGCC GGCAAGATTC GCAATAACAA TCTCAGTCAT ACCCCTTACT TGTTAGAGGG GACGTATCAA CGCGGCATTA GCAACGCACT CACCGCTTAT GCAGGCAGCA CGATCAGTCA GCGGTACATC GCAGCGATAG CAGGGGCAGG TGTCTCTACC CCAGTTGGTG CATTTTCCTT GGACGGTACC GTCGCACGCA CAAAGCTACG TAACGACACA TTTAGCGGTA CGAGTCTACG CTTAAGCTAC AGCAAGTTAC TGAGCCCAAC CAATACCAAT ATCACACTCG CTGCATATCG GTATTCGACA TCAGGCTTTT ATGGCTTGCA AGAGGCGATC ATGGCGATGG ACTACGAAAG GCGCGGCCTT AGTACAGCGT CAATTTATAG ACAGCGCAGT CAGCTTCAAC TCACTGTGAG CCAACAACTA GGACAGTATG GTTCACTGTA CCTGACAGGA TCAGCGCGAC AATACTGGAA CCAACGCGGC AACACGATCC AGTACCAGGG AGGCTACAAC GTATCCTATA AGGGCGTGAG TTACGGCCTC TCAGCGTTAC GCTCACAGAT CCCAAGCATG CCCAGTGATA CACAAATGCT ATTCACAGTA TCGGTTCCGC TAGGGAAAGC TAATCCGGTG ATAGTCACTA GCCAAATCGG TTCACGCGAT GGACGCTACG ACAACAGCCG CGTAAGCCTA GTGGGAGCTA GTGGCAAAGA CAGTGCATTA ACGTATGGGA TAGCCGCATC CGATGCGCGA AACAGCGCCA CCATGATCGA CGGCAATGTG CAATACCGTA GCCGCTATGC TGCGCTTTCA GGCAGCTATA GCCATAACCG CAACTATAAT CAGATGAGTC TTGGGGCCAG TGGTAGCATT GTCCTCCACA GTGGAGTTGC GACACTGGCT CCGCAACGCG GTGACACAAT GGTTATTATC GAAGCACCGG CAGCCAAGGG CGCCCGCGTA TCCAACATAT CCGGCGTGCG CATTGATAGC CGTGGCTATG CCGTCGTACC TTATGTCTCA CCGTATCGAA TGAACACGAT CACCCTTGAT CCCGAAGGGA CAGATCCGGA TGTGGAACTG GAAACATCCA GCCAGCTTAT CGCTCCCTAT GCAGGTGCAA TCTCCAAAGT GACTTTTGGA ACACGGAAGG GCCGCGCATT GATCGTTAAT GCACGCACGC CGACTGGTAA AGCTTTGCCA TTCGGTGCAC AGGTCATTGA TGCCGAAGGA CAATCAGTTG GCCTGGTGGC GCAGGGTAGC CTCATCTACA TACGCGCAAA AGATCCCCAA GGCCGCCTGA CCATTAAATG GGGAGATCAA GCGGCACAAC AATGCCGTTT GGAATATCAA CTTCCTGCCA ACGAAGCTTC GACTCGCCCA AGCAGTTTCA CAACTTTGGA AGCCATATGT CGATAA
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Protein sequence | MKKQEISQRR KVGSLQLSSV KFVTESEIDS NRKLMAPELD LTQIRGRYFK QRVLVAAIAS TCTLMMSRLA CAETEPDNLG QRMLVAKADN TAPQRVAQTA NFNNSFLVGQ ARSVDLGMFS RGNPVIAGLY RADLYVNGQW KGRRDMEFRN TKDDKEAVTC MTLAMLDELG IDTSALTDSA ADMQACKTID QWLPDAYARF DVATQRLDVS IPQAAMRRSA RGYVSPSLWD HGVNAGFIGY AFNWYGGRNA NAINSRRRSD SAYLGINSGL NLGDWQFRHN SSYSWHSNEG SLWQNISTYA QRAFPNTSSM LTVGDAYTSG ELFDSIGFRG INLATDDRML PDSLRGYAPI VRGIAQSNAR VEIRQNGQLI YSTTVAPGAF VIDDLYPTGY GGDLQVTVYE TDGRQQQFSV PYGSVPQMLR AGSQRYSLTA GKIRNNNLSH TPYLLEGTYQ RGISNALTAY AGSTISQRYI AAIAGAGVST PVGAFSLDGT VARTKLRNDT FSGTSLRLSY SKLLSPTNTN ITLAAYRYST SGFYGLQEAI MAMDYERRGL STASIYRQRS QLQLTVSQQL GQYGSLYLTG SARQYWNQRG NTIQYQGGYN VSYKGVSYGL SALRSQIPSM PSDTQMLFTV SVPLGKANPV IVTSQIGSRD GRYDNSRVSL VGASGKDSAL TYGIAASDAR NSATMIDGNV QYRSRYAALS GSYSHNRNYN QMSLGASGSI VLHSGVATLA PQRGDTMVII EAPAAKGARV SNISGVRIDS RGYAVVPYVS PYRMNTITLD PEGTDPDVEL ETSSQLIAPY AGAISKVTFG TRKGRALIVN ARTPTGKALP FGAQVIDAEG QSVGLVAQGS LIYIRAKDPQ GRLTIKWGDQ AAQQCRLEYQ LPANEASTRP SSFTTLEAIC R
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