Gene Xfasm12_0028 details

Gene Information

• Locus tag: Xfasm12_0028
• ID: 6120889
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: +
• Start bp: 29928
• End bp: 30350
• Gene Length: 423 bp
• Protein Length: 140 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 641648115
• Product: PilE protein
• Protein accession: YP_001774706
• Protein GI: 170729273
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4968] Tfp pilus assembly protein PilE
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 37
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGTTCG TGAATGATGT AACTTCCATG ATTAAAAACA AAAAACAAAA CGGCTTCACT 
TTGATAGAAG TGATGATTGT GGTGGTGATC GTGGCTATCT TGGCAGCGGT TGCTATGACC 
AGCTACCAAG GGAGCATTCT CAGAACCCGT CGCTCAGCGG CTCAAGCCTG CTTACAACAA 
CAAGCGCAAT TTATAGAGCG TTATTACACA ACCCATATGA CGTACCTTGG GGTGGAGAAC 
TCCGCGCCAA CATGCGATCC CAGCGCCAAT CTTGATAACT TTTACCGTTT CACTGTAGCT 
GCGCAGGCAA GCACGTTCAT GCTGACAGCA GATCCCCAGG GAGCACAGGC TGGGGATCAC 
TGTGGCAGGC TCACACTTTC AAACACTGGG GAGCGTACCC CGCGTGTTGA CGGTTGTTGG 
TGA 

 

Protein sequence

MMFVNDVTSM IKNKKQNGFT LIEVMIVVVI VAILAAVAMT SYQGSILRTR RSAAQACLQQ 
QAQFIERYYT THMTYLGVEN SAPTCDPSAN LDNFYRFTVA AQASTFMLTA DPQGAQAGDH 
CGRLTLSNTG ERTPRVDGCW