| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0023 |
|---|
| Symbol | |
|---|
| ID | 6120884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 23734 |
|---|
| End bp | 24237 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641648110 |
|---|
| Product | pre-pilin like leader sequence |
|---|
| Protein accession | YP_001774701 |
|---|
| Protein GI | 170729268 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGACAA TTGCCATCCT GGCAATTCTT GCGGGCCTTG CTTATCCCAG CTTTATGAAT
CTGATTAATG GTGAGCGCTT GACCAGCAGT GCCAACGAGT TAGTTGCTTC TTTGCAACTT
GCCAGGACAG AAGCAATCCG CCTTGGTTCT CCCGTTACTG TGTGTCGCAG TGACGACGGC
AGCACTTGTC GTACTGGGGG CCCTTGGCAA CGCTGGGTCA CCGTGGCCAA GGGCAGGAAT
AACATCATCA AGGTAAACGA TGCGATACCC AACGTTACTG TGCAAGGCAG CCCGAGAATC
ACCAGTTTAA GCGACCAAAT TGTGTTCAGA CCGGATGGGC TGGCGCGTGA CGTTAGCGGC
GCATTGCTGA CGGCGCAATT GTCGCTATGT ATGCCCAACA CACGGATGGC TAACAACCTT
CGTTTTGTCA GCATCAATGG CGGCAGCCGG ATCCGCGTCT CTCCCGGAGC TACAGCCCCA
TGTTCTCAGC CTAACGACGA ATAA
|
|---|
| Protein sequence | MVTIAILAIL AGLAYPSFMN LINGERLTSS ANELVASLQL ARTEAIRLGS PVTVCRSDDG
STCRTGGPWQ RWVTVAKGRN NIIKVNDAIP NVTVQGSPRI TSLSDQIVFR PDGLARDVSG
ALLTAQLSLC MPNTRMANNL RFVSINGGSR IRVSPGATAP CSQPNDE
|
|---|
| |