Gene Xfasm12_0005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXfasm12_0005 
SymbolgyrB 
ID6120012 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXylella fastidiosa M12 
KingdomBacteria 
Replicon accessionNC_010513 
Strand
Start bp4648 
End bp7092 
Gene Length2445 bp 
Protein Length814 aa 
Translation table11 
GC content47% 
IMG OID641648096 
ProductDNA gyrase subunit B 
Protein accessionYP_001774688 
Protein GI170729255 
COG category[L] Replication, recombination and repair 
COG ID[COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 
TIGRFAM ID[TIGR01059] DNA gyrase, B subunit 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGAAA AGCAGAATAC CTCGCTGCTC AGTAATGGCG GCATATATGA CTCAAGTAAA 
ATCACAGTAC TACGTGGACT GGATGCTGTT CGCAAGCGTC CAGGGATGTA TATCGGAGAT
GTCCATGACG GTACAGGTTT GCACCACATG GTGTTTGAAG TTGTCGATAA CTCGGTGGAT
GAGGCATTAG CTGGTCATGC CGACAGCATT CTTGTCAAGA TCCATGTTGA TGGGTCTGTC
TCTGTTTCGG ATAACGGTCG AGGTATCCCA GTAGATATTC ATAAAGAAGA GGGTGTTTCT
GCCGCTGAAG TGATCCTGAC AGTTTTACAT GCTGGTGGTA AGTTCGACGA TAACAGCTAT
AAGGTTTCTG GTGGTTTGCA TGGGGTAGGA GTTTCAGTGG TCAACGCCCT TTCTGAGCGA
TTATGGCTTG ATATTTGGCG TGATGGTTAC CACTACCAAC AAGAATATGT TTTGGGTGAT
CCGCAATATC CTCTTAAGCA GTTAGAGGTG TCAGCGAAAC GCGGTACTAC ATTACGTTTT
AAACCGGCAA AAGAGATCTT CAGTGATGTG GAGTTTCATT ACGAAAATCT TGCAAAGCGC
CTCCGTGAGT TATCCTTCCT CAATTCCGGC CTTAAAGTTA GTTTGATTGA TGAACGTGGT
GAGGGTCGGC GCGACGATTT TCACTATGAA GGTGGTATTC GTAGCTTTGT AGAACATTTG
GCTCAATTGA AGACCCCGTT GCATTCGAAT GTAATTTCGG TCACCGGTGA GCACAACGGC
ATTGTTGTGG ATGTTGCTTT ACAGTGGACT GATGCCTACC AAGAAACAAT GTATTGTTTT
ACAAATAACA TTCCACAAAA AGATGGTGGT ACCCACCTTG CTGGCTTCCG TGCTGCATTG
ACTCGTACCT TGGGTAATTA CATTGAGCAG AATGGGATTG CTAGGCAAGC GAAGATCACT
TTTTCTGGTG ATGATATGCG TGAAGGTATG ATTGCCGTGT TATCGGTGAA AGTCCCTGAA
CCTAGTTTTT CTTCACAAAC CAAGGAAAAG TTGGTGAGCT CGGATGTCAA GCCGGCAGTG
GAAGCTACCT TTGGCTTGCG TTTGGAGGAA TTCTTGCAAG AGAATCCTAA CGAAGCACGT
GCAATTGCTG GAAAGATTGT CGATGCTGCT CGTGCTCGCG AGGCTGCTCG AAAAGCCCGT
GATCTAACCC GTCGAAAAGG TGTGCTTGAT ATCGCCGGTT TGCCGGGTAA GTTGGCAGAT
TGTCAAGAGA AAGACCCAGC GATGTCAGAA TTGTTTATCG TCGAAGGGGA TTCTGCTGGT
GGTTCTGCAA AGCAGGGACG TAACCGAAAA AATCAGGCAG TATTGCCGCT CAGGGGTAAG
ATTCTTAACG TTGAACGTGC ACGCTTCGAC CGTATGCTTT CTAGTGCTGA GGTTGGTACA
TTGATCACGG CCCTTGGGAC AGGCATCGGT AAGGACGAAT ATAACCCAGA TAAGCTACGT
TACCATCGCA TCATCATTAT GACCGATGCT GATGTGGATG GTTCGCATAT CCGTACTTTA
TTGCTGACGT TTTTTTACAG GCAAATGCCA GAATTGATTG AACGTGGCCA TATATATATT
GGCTTGCCTC CCTTGTACAA GCTAAAGCAG GGTAAAAGTG AGCTGTACTT AAAGGACGAT
ATCGCATTGA ATGTTTATTT GGCGAATAGC GCGGTTGAAG GAGCGCAATT ACTCCCCGCT
GAAGGTGAAC CGCCCATTGA GGGTCTTGCA TTGGAGAAAT TGCTGATTAC ATATATCGCT
GCAAAAGATA CTATCGTGCG TCATTCGCAT CGCTATGATT CTCGCCTCCT GGAAGCACTG
CTTGAATTTA CTCCCTTGGA TTCGACTTGC TTTCAATCCT ACAGTGATAG CGAACATCTA
CAATCGCTGA TGGCATTGCT GAACCAGTCC AGCTTGGGTG CTCCGCGTTA TATTCTTAAG
ATGCAGTTTC CTGATGAGCA ACATTCTGCC GCCTTGTTGG CGACCCGCTA TCACATGGGG
GAGGAATTGA CTCAGGTGTT GCAATTATCA GCATTAGAGA CTGGTGAGTT ACGTCCACTC
TATGAAGCGG CCAAGTTGCT GCACGGCTTA ATTCGTAACG GCGCTAAAAT TGTTCGTGGC
ACTAAATCGC AATCAATTGA GTGTTTTGGT GATGCGCAAG CTTGGTTGCT TGAAGAGGCG
AAGAAAGGTC GCCAAATCCA GCGCTTTAAG GGGTTGGGTG AAATGAATCC GGAGCAGCTA
TGGGATACTA CGGTGAATCC GGACACTCGC CGTCTTTTGC AAGTTTGTAT TGAAGATGGG
ATTGCTGCTG ACCAAATCTT CAGCACACTG ATGGGTGATG TGGTAGAGCC ACGCCGTGGC
TTTATTGAGA ACAATGCATT AAAAGTGACT CGCTTGGATA TTTAA
 
Protein sequence
MTEKQNTSLL SNGGIYDSSK ITVLRGLDAV RKRPGMYIGD VHDGTGLHHM VFEVVDNSVD 
EALAGHADSI LVKIHVDGSV SVSDNGRGIP VDIHKEEGVS AAEVILTVLH AGGKFDDNSY
KVSGGLHGVG VSVVNALSER LWLDIWRDGY HYQQEYVLGD PQYPLKQLEV SAKRGTTLRF
KPAKEIFSDV EFHYENLAKR LRELSFLNSG LKVSLIDERG EGRRDDFHYE GGIRSFVEHL
AQLKTPLHSN VISVTGEHNG IVVDVALQWT DAYQETMYCF TNNIPQKDGG THLAGFRAAL
TRTLGNYIEQ NGIARQAKIT FSGDDMREGM IAVLSVKVPE PSFSSQTKEK LVSSDVKPAV
EATFGLRLEE FLQENPNEAR AIAGKIVDAA RAREAARKAR DLTRRKGVLD IAGLPGKLAD
CQEKDPAMSE LFIVEGDSAG GSAKQGRNRK NQAVLPLRGK ILNVERARFD RMLSSAEVGT
LITALGTGIG KDEYNPDKLR YHRIIIMTDA DVDGSHIRTL LLTFFYRQMP ELIERGHIYI
GLPPLYKLKQ GKSELYLKDD IALNVYLANS AVEGAQLLPA EGEPPIEGLA LEKLLITYIA
AKDTIVRHSH RYDSRLLEAL LEFTPLDSTC FQSYSDSEHL QSLMALLNQS SLGAPRYILK
MQFPDEQHSA ALLATRYHMG EELTQVLQLS ALETGELRPL YEAAKLLHGL IRNGAKIVRG
TKSQSIECFG DAQAWLLEEA KKGRQIQRFK GLGEMNPEQL WDTTVNPDTR RLLQVCIEDG
IAADQIFSTL MGDVVEPRRG FIENNALKVT RLDI