Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_0005 |
Symbol | gyrB |
ID | 6120012 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | + |
Start bp | 4648 |
End bp | 7092 |
Gene Length | 2445 bp |
Protein Length | 814 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641648096 |
Product | DNA gyrase subunit B |
Protein accession | YP_001774688 |
Protein GI | 170729255 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGAAA AGCAGAATAC CTCGCTGCTC AGTAATGGCG GCATATATGA CTCAAGTAAA ATCACAGTAC TACGTGGACT GGATGCTGTT CGCAAGCGTC CAGGGATGTA TATCGGAGAT GTCCATGACG GTACAGGTTT GCACCACATG GTGTTTGAAG TTGTCGATAA CTCGGTGGAT GAGGCATTAG CTGGTCATGC CGACAGCATT CTTGTCAAGA TCCATGTTGA TGGGTCTGTC TCTGTTTCGG ATAACGGTCG AGGTATCCCA GTAGATATTC ATAAAGAAGA GGGTGTTTCT GCCGCTGAAG TGATCCTGAC AGTTTTACAT GCTGGTGGTA AGTTCGACGA TAACAGCTAT AAGGTTTCTG GTGGTTTGCA TGGGGTAGGA GTTTCAGTGG TCAACGCCCT TTCTGAGCGA TTATGGCTTG ATATTTGGCG TGATGGTTAC CACTACCAAC AAGAATATGT TTTGGGTGAT CCGCAATATC CTCTTAAGCA GTTAGAGGTG TCAGCGAAAC GCGGTACTAC ATTACGTTTT AAACCGGCAA AAGAGATCTT CAGTGATGTG GAGTTTCATT ACGAAAATCT TGCAAAGCGC CTCCGTGAGT TATCCTTCCT CAATTCCGGC CTTAAAGTTA GTTTGATTGA TGAACGTGGT GAGGGTCGGC GCGACGATTT TCACTATGAA GGTGGTATTC GTAGCTTTGT AGAACATTTG GCTCAATTGA AGACCCCGTT GCATTCGAAT GTAATTTCGG TCACCGGTGA GCACAACGGC ATTGTTGTGG ATGTTGCTTT ACAGTGGACT GATGCCTACC AAGAAACAAT GTATTGTTTT ACAAATAACA TTCCACAAAA AGATGGTGGT ACCCACCTTG CTGGCTTCCG TGCTGCATTG ACTCGTACCT TGGGTAATTA CATTGAGCAG AATGGGATTG CTAGGCAAGC GAAGATCACT TTTTCTGGTG ATGATATGCG TGAAGGTATG ATTGCCGTGT TATCGGTGAA AGTCCCTGAA CCTAGTTTTT CTTCACAAAC CAAGGAAAAG TTGGTGAGCT CGGATGTCAA GCCGGCAGTG GAAGCTACCT TTGGCTTGCG TTTGGAGGAA TTCTTGCAAG AGAATCCTAA CGAAGCACGT GCAATTGCTG GAAAGATTGT CGATGCTGCT CGTGCTCGCG AGGCTGCTCG AAAAGCCCGT GATCTAACCC GTCGAAAAGG TGTGCTTGAT ATCGCCGGTT TGCCGGGTAA GTTGGCAGAT TGTCAAGAGA AAGACCCAGC GATGTCAGAA TTGTTTATCG TCGAAGGGGA TTCTGCTGGT GGTTCTGCAA AGCAGGGACG TAACCGAAAA AATCAGGCAG TATTGCCGCT CAGGGGTAAG ATTCTTAACG TTGAACGTGC ACGCTTCGAC CGTATGCTTT CTAGTGCTGA GGTTGGTACA TTGATCACGG CCCTTGGGAC AGGCATCGGT AAGGACGAAT ATAACCCAGA TAAGCTACGT TACCATCGCA TCATCATTAT GACCGATGCT GATGTGGATG GTTCGCATAT CCGTACTTTA TTGCTGACGT TTTTTTACAG GCAAATGCCA GAATTGATTG AACGTGGCCA TATATATATT GGCTTGCCTC CCTTGTACAA GCTAAAGCAG GGTAAAAGTG AGCTGTACTT AAAGGACGAT ATCGCATTGA ATGTTTATTT GGCGAATAGC GCGGTTGAAG GAGCGCAATT ACTCCCCGCT GAAGGTGAAC CGCCCATTGA GGGTCTTGCA TTGGAGAAAT TGCTGATTAC ATATATCGCT GCAAAAGATA CTATCGTGCG TCATTCGCAT CGCTATGATT CTCGCCTCCT GGAAGCACTG CTTGAATTTA CTCCCTTGGA TTCGACTTGC TTTCAATCCT ACAGTGATAG CGAACATCTA CAATCGCTGA TGGCATTGCT GAACCAGTCC AGCTTGGGTG CTCCGCGTTA TATTCTTAAG ATGCAGTTTC CTGATGAGCA ACATTCTGCC GCCTTGTTGG CGACCCGCTA TCACATGGGG GAGGAATTGA CTCAGGTGTT GCAATTATCA GCATTAGAGA CTGGTGAGTT ACGTCCACTC TATGAAGCGG CCAAGTTGCT GCACGGCTTA ATTCGTAACG GCGCTAAAAT TGTTCGTGGC ACTAAATCGC AATCAATTGA GTGTTTTGGT GATGCGCAAG CTTGGTTGCT TGAAGAGGCG AAGAAAGGTC GCCAAATCCA GCGCTTTAAG GGGTTGGGTG AAATGAATCC GGAGCAGCTA TGGGATACTA CGGTGAATCC GGACACTCGC CGTCTTTTGC AAGTTTGTAT TGAAGATGGG ATTGCTGCTG ACCAAATCTT CAGCACACTG ATGGGTGATG TGGTAGAGCC ACGCCGTGGC TTTATTGAGA ACAATGCATT AAAAGTGACT CGCTTGGATA TTTAA
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Protein sequence | MTEKQNTSLL SNGGIYDSSK ITVLRGLDAV RKRPGMYIGD VHDGTGLHHM VFEVVDNSVD EALAGHADSI LVKIHVDGSV SVSDNGRGIP VDIHKEEGVS AAEVILTVLH AGGKFDDNSY KVSGGLHGVG VSVVNALSER LWLDIWRDGY HYQQEYVLGD PQYPLKQLEV SAKRGTTLRF KPAKEIFSDV EFHYENLAKR LRELSFLNSG LKVSLIDERG EGRRDDFHYE GGIRSFVEHL AQLKTPLHSN VISVTGEHNG IVVDVALQWT DAYQETMYCF TNNIPQKDGG THLAGFRAAL TRTLGNYIEQ NGIARQAKIT FSGDDMREGM IAVLSVKVPE PSFSSQTKEK LVSSDVKPAV EATFGLRLEE FLQENPNEAR AIAGKIVDAA RAREAARKAR DLTRRKGVLD IAGLPGKLAD CQEKDPAMSE LFIVEGDSAG GSAKQGRNRK NQAVLPLRGK ILNVERARFD RMLSSAEVGT LITALGTGIG KDEYNPDKLR YHRIIIMTDA DVDGSHIRTL LLTFFYRQMP ELIERGHIYI GLPPLYKLKQ GKSELYLKDD IALNVYLANS AVEGAQLLPA EGEPPIEGLA LEKLLITYIA AKDTIVRHSH RYDSRLLEAL LEFTPLDSTC FQSYSDSEHL QSLMALLNQS SLGAPRYILK MQFPDEQHSA ALLATRYHMG EELTQVLQLS ALETGELRPL YEAAKLLHGL IRNGAKIVRG TKSQSIECFG DAQAWLLEEA KKGRQIQRFK GLGEMNPEQL WDTTVNPDTR RLLQVCIEDG IAADQIFSTL MGDVVEPRRG FIENNALKVT RLDI
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