| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_6990 |
|---|
| Symbol | |
|---|
| ID | 6125899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010512 |
|---|
| Strand | - |
|---|
| Start bp | 1103983 |
|---|
| End bp | 1105488 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641647994 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_001774586 |
|---|
| Protein GI | 170735472 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.452647 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTTC CTCATCCGCT TCCGTTCGCT CGCCGCATCG TCGCGCTCGG CGCCGCCGCC
GCACTGACCG CCTGCTCGAC GCTGCCGCCC TATTCGCCGC CCGCCGTCGC GGTGCCCGCG
CACTACGCGG GCGCACCGGC AGCATCTGCC GGGCAAGCCG GCTGGCACGT CGCGATGCCG
GCCGACGCCG CCGCGCGCGG CGCGTGGTGG ACCGTGTTCG ACGACGCCGA TCTGAACGCG
CTCGAAGCGC GCGTCGACGT GTCGAACCAG ACGGTGAAGA AAGCCGTCGC CGACCTGCAA
CAGGCCCGCG CGATGGTCGA CTATCAGCAC GCCGGGTTCC TGCCGACGAT CACGGCCGGC
GCCTCGCAGA GCCGGGCGCG CGTGTCGCAG AACCGGCTCG GCTCGTCGCT CGCCGGCAAG
ACGACGCCCG ACTACCAGGC AGGCGTGGCC GCGAGCTGGG AGCCCGACCT GTTCGGCCGC
GTGCGCGACG CGGTAACCGG CGCCCAGGCG AACGCCGCCG CGAGCGCGGC CGATCTGCAG
GCCGTGAAGC TGTCGGTCAC GGCCGAACTC GCGACCGACT ATTTCGCGCT GCGCTCGCTC
GACACGCAGA AGCAATTGCT CGACGACTCG GTACGCGCGT ACGCGGACGC GCTGACGCTG
CTCAAGCAGC AACTCGCCGC GGGTGCGATC GACGCGTCGG CGGTCGCGCA AGCCGAGACC
CAGCTCGAAT CGACGCGCAC GCAGGACACC GATATCGATG CGTCGCGTGC GCAGTTGCAG
CACGCGATCG CGACGCTCGT CGGCGAGAGC GCGTCGACGT TCGCGCTGCC GCCGCGCGTG
CAGGCGTTCC ACGTGCCGGC CATTCCGGCC GGCGTGCCGT CGCAACTGCT GGAGCGCCGG
CCCGACATCG CGGCGGCCGA GCGTCGCGTG GCGGCCGCGA ACGCGCAGAT CGGCGAGGCG
CGGGCCGCGT TCTTCCCCGA TCTGGTGCTA TCAGCGAGCG CCGGCCTCGA AAGTTCGTTC
TTCGCGCCGT GGCTCGCCGC GCCGAGCCTG TTCTGGTCGC TCGGCCCGCA ACTCGCCGGC
ACGCTGTTCG ACGGCGGCCG CCGCAGCGCG TCGCTGCGCG GCGCGCATGC GCAATACGAC
GGCGCGGTCG CCGACTACCG GCAAACCGTG CTCGTCGCGT TCCAGCAGGT CGAGGATCAG
TTGTCGGCGC TCGATGCACT CGCGTCCGAA GCCGGCAGCC AGCAGCGCGC GACCGACGCG
GCCGACCTGT CGCTGCGGCT GACGACGAAT CGCTTCAACG CCGGCGCCGT CAGCTATCTG
GACGTGGTGA CCGCGCAGAC GATCGCGCTG ACGAACCGGC GCACGGCCGA TCAGATCGAC
GCGCGTCGGG TCGAGGCTGA AGTCGGGTTG CTGAAGGCGT TGGGTGGTGG CTGGCAGGTG
AGCGCGAGCG CAGGCTCAGA CGCGGAATCG AACATCGGCA AGAAGGAACC CGCGGCGGCC
GGTTGA
|
|---|
| Protein sequence | MRLPHPLPFA RRIVALGAAA ALTACSTLPP YSPPAVAVPA HYAGAPAASA GQAGWHVAMP
ADAAARGAWW TVFDDADLNA LEARVDVSNQ TVKKAVADLQ QARAMVDYQH AGFLPTITAG
ASQSRARVSQ NRLGSSLAGK TTPDYQAGVA ASWEPDLFGR VRDAVTGAQA NAAASAADLQ
AVKLSVTAEL ATDYFALRSL DTQKQLLDDS VRAYADALTL LKQQLAAGAI DASAVAQAET
QLESTRTQDT DIDASRAQLQ HAIATLVGES ASTFALPPRV QAFHVPAIPA GVPSQLLERR
PDIAAAERRV AAANAQIGEA RAAFFPDLVL SASAGLESSF FAPWLAAPSL FWSLGPQLAG
TLFDGGRRSA SLRGAHAQYD GAVADYRQTV LVAFQQVEDQ LSALDALASE AGSQQRATDA
ADLSLRLTTN RFNAGAVSYL DVVTAQTIAL TNRRTADQID ARRVEAEVGL LKALGGGWQV
SASAGSDAES NIGKKEPAAA G
|
|---|
| |