| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_6743 |
|---|
| Symbol | |
|---|
| ID | 6125664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010512 |
|---|
| Strand | + |
|---|
| Start bp | 830532 |
|---|
| End bp | 832613 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641647759 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001774351 |
|---|
| Protein GI | 170735237 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3300] MHYT domain (predicted integral membrane sensor domain)
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCGA CCAGTTATAA CGCGTTGCTC GTTCTTCTTT CGCTGCTGAT TGCCATATTG
GCGTCCTACA CCGTGCTGGA CATGGCCGGG CGCATCAAGA GCGCTCAGGG GCACGCCGCA
CAGTGGTGGC TGGTCGGCGC GGCTTGCGTG ATGGGCACGG GCATCTGGTC GATGCATTTC
GTCGGCATGC TTGCTTTCGC GTTGCCGATT CCATTGGGAT ACGATCCGGC CATTACCTTG
CTGTCGTTGC TGATCGCGAT CGTCTGCTCC ACGGGCGCAC TGTGGCTCGT CTGCCGGGAC
ACGCTGAAGT GGCGCCGGCT GTGCGGCGGG GCCATGTTGA TGGGCGCCGG CGTAGCGGGT
ATGCATTACA CGGGCATGGC TTCGATGCGC ATGTCGCCCG GCATCCGCTA CGACCCGTTG
CTCGTTTGCC TGTCGGTCGC GATTGCCGTG GTCGCGTCGG GCGCCGTGCT GTGGATCGTA
TTCATCCGGC GTGCCAACTC GTCGCGCGTG CGCCTGCTCA ACCTGGGATC GGCAGTCCTG
ATGGGCGCCG CCATCGCCGG CATGCACTAT ACCGGGATGG CCGCCGCCCG CTTCCTGCTG
GGCAGCATCT GCGGGGCAGC CGGCTCCCGC ATGGACGCCG GCTGGCTGGC ACTCGTCATC
ATCGTGGCCA CGTTGGCCAT ACTCGCGATC GCGTTGATCG TCTCGATCCT CGATCTGCGT
CTGGAGGCCC GCACGGCGGT ACTGGCCACG TCACTGGCCG AAGCCAACCA GGAATTGACG
TATCTGGCGC TGCACGACAA CCTCACCAAG CTGCCCAATC GCGTGCTGCT CGAGGACCGG
ATCGATCAGG CGATCCAGGG CGCCGACCGC GAGCACGGGA GCTTCGCGCT GATGTTCATG
GACCTCGATG GATTCAAGGC GGTCAACGAC GCCTATGGTC ATCACGTCGG CGATCTGTTG
CTGGTCGACG TGGCGCGGCG CATCGGCGCG AACCTGCGTT CGCAGGACAC GATTGCCCGC
CTGGGGGGCG ACGAATTCGT GCTGGCCGTG GCAGTGGACG AGCCCGCGGA CGCGGCCGAC
GTGGCGGACA AGATATTGGC GGTGATCCGG AAACCGTTCC GCGTGGCCGA ACACGAATTG
CGCGTGTCGG CCAGTATCGG CATTGCGCTC TATCCCGGCA ACGGCAGCGA TTTCCGCGAC
CTGATGACCA ACGCCGATGC AGCGATGTAT CACGCCAAGG CACTCGGCCG GAACGCGTAC
TGCCTCTTCG AGGCATCGAT GAACGCGAAT GTCCGCGAGC ACCTGAAAAT CGTGCAGGAG
CTCCGTCTGG CGCTGGAGCG GCGTGAACTG GTCCTGCATT ACCAACCGAA GTTCGACGTC
CCGCACGGAC CGATCATCGG CGTCGAGGCG CTGTTGCGAT GGATGCACCC GACGCGCGGT
CTCATTTCAC CCGATCAGTT CATCTCGATC GCGGAAAAGA CCGGCTTGAT CGTGCCGATC
GGCGAGTGGG TGCTGGACGA GGCCTGCCGG CAGATGCGCG TATGGTGCGA TGCAGGTCGA
ACCGACTGGA CGATGGCCGT CAACCTGTCG CCGCTGCAAT TCGGTCACGC GAGCCTGATC
CGGGTCGTGG AGGCCACATT GCAGCGGCAC GCGCTGGAGC CGCACTGCCT GACGTTGGAG
ATCACCGAAT CGACCGCGAT GCGCGATGCG GACGCCAGCT TGAGAATCCT GCAGCAGCTT
CACGACATGG GCGTGCGTAT TTCCATCGAC GACTTCGGAA CGGGTTATTC AAGCTTGCTG
TATCTCAAAC GCTTGCCGGC CAGCGAGCTC AAGATCGACC GGGGCTTCAT TCGCGATCTC
GAACACGATA CCGAGGATGC CGCGATCATT TCGGCGATCG TCGCGCTCGG CCGGGCACTC
GACCTGAAGA TCGTCGCGGA GGGCGTTGAA ACGACGGCGC AGCAGCAGTT CCTGACCCGC
CTCGGTTGCA ACTCGCTGCA GGGCTTCCTG CTCGGACGCC CGATGCCGGC GGATCACTTC
ATCGAAATGA CCGCGCAAGG TACTGCGATC AAGCCTGTTT GA
|
|---|
| Protein sequence | MLPTSYNALL VLLSLLIAIL ASYTVLDMAG RIKSAQGHAA QWWLVGAACV MGTGIWSMHF
VGMLAFALPI PLGYDPAITL LSLLIAIVCS TGALWLVCRD TLKWRRLCGG AMLMGAGVAG
MHYTGMASMR MSPGIRYDPL LVCLSVAIAV VASGAVLWIV FIRRANSSRV RLLNLGSAVL
MGAAIAGMHY TGMAAARFLL GSICGAAGSR MDAGWLALVI IVATLAILAI ALIVSILDLR
LEARTAVLAT SLAEANQELT YLALHDNLTK LPNRVLLEDR IDQAIQGADR EHGSFALMFM
DLDGFKAVND AYGHHVGDLL LVDVARRIGA NLRSQDTIAR LGGDEFVLAV AVDEPADAAD
VADKILAVIR KPFRVAEHEL RVSASIGIAL YPGNGSDFRD LMTNADAAMY HAKALGRNAY
CLFEASMNAN VREHLKIVQE LRLALERREL VLHYQPKFDV PHGPIIGVEA LLRWMHPTRG
LISPDQFISI AEKTGLIVPI GEWVLDEACR QMRVWCDAGR TDWTMAVNLS PLQFGHASLI
RVVEATLQRH ALEPHCLTLE ITESTAMRDA DASLRILQQL HDMGVRISID DFGTGYSSLL
YLKRLPASEL KIDRGFIRDL EHDTEDAAII SAIVALGRAL DLKIVAEGVE TTAQQQFLTR
LGCNSLQGFL LGRPMPADHF IEMTAQGTAI KPV
|
|---|
| |