| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_6682 |
|---|
| Symbol | |
|---|
| ID | 6125604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010512 |
|---|
| Strand | + |
|---|
| Start bp | 759011 |
|---|
| End bp | 760537 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641647694 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_001774291 |
|---|
| Protein GI | 170735177 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0229467 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0582449 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAC ATGCTTTGAC TGCAACCGCG GTCGCACTGG CTGCCGCGCT GTTTGCCACG
GGCTGCACGA TGGCGCCGCA TTACAAGCGG CCCGACGCAC CCGTCGCGCA GGCGTACCCG
GCCGGCGGCG TCTACGCGAC GCAGCCGGGT GCGGCCGGCG CGCGCAGCGC GAACGGCCAG
GCTGCGGCCG CCATCGGCTG GCGCGAGTTC TTCGTCGATC CGCGCCTGCA GCGGCTGATC
GAGATCGCGC TGAAAAACAA CCGCGACCTG CGCGTGTCGG TGCTCAATAT CGAGGCGGCG
CGTGCGCAGT ACCAGATCAC GCGCGCGGGG CTGTTCCCGA CGCTCGGCGG TATGGGCACG
GGCAACATCC AGCGCTATCC GCAAGGTGTC TCGCCGACCA ACCAGGCCTA CATTTCGCGC
ACCTACAACG TCGGCCTGTC CGCGTCGTGG GAGCTCGACC TGTTCGGCCG CGTGCAGAGC
CTGAAGGACC AGGCGCTCGC GCAATACCTG TCGACCGCGT ATGCGCGGCA GGCTTCGGAG
ATCTCGCTGG TGTCGCAGGT GGCGGATCAA TACCTGACGC TGCTGTCGAC CGATGACCTG
TTGAAGGTCA CGGAGGACAC GCTGAAGACC GCGCAGGCGT CTTACGACCT GACCAAGCTG
CAGTTCGACA ACGGTACGGG CTCGGAGCTC GAGCTGCGTC AGGCGCAGAC GGTGGTCGAG
ACGGCGCTCG CGAACCAGCA GGCGCAGGCC CGTGCCCGCG CGCAGGCGCT GAACGCGCTG
GTGCTGCTGA TCGGCGAGCC GCTGCCGGAC GATCTGCCGG CGGGCATGCC GCTCGAAGCG
CAGAACCTGC TGACGGACGT GCCGGCTGGC CTGCCGTCGG ATCTGCTCAC GCGTCGTCCT
GACGTGATGC AGGCCGAGCA GACGCTGCTG GCCGCGAACG CGAACATCGG CGCGGCGCGC
GCGGCGTTCT TCCCGAAGAT CTCGCTGACG GGCGCGTTCG GCACCGCGAG CCCGACGCTG
GGCGGCCTGT TCAAGGCCGG TACCGCGGCA TGGTCGTTCG CGCCGAGCAT CGCACTGCCT
ATCTTCGAGG GCGGGCAGAA CATCGCGAAC CTTGATCTCG CGAACGTGCA GAAGCGCATC
GAGATCGCAA ACTACGAGAA GGCGATCCAG TCGGCGTTCC GCGAAGTATC GGACGGCCTC
GCCGCACGCG GCACGTACGA CCAGCAGATC GCGGCGCTGG AGCGCAACGA GCATGCGCAG
CAGCGTCGTT TCGACCTGTC GGACCTGCGT TACAAGAACG GTGTCGACAG CTACCTGTCG
GTGCTGACTG CGCAGACGGA TCTGTACTCG GCACAGCAGT CGCTGATCAG CGCACGCCTG
GCGCGCTGGA CGAACCTGGT CGACCTGTAC CGCGCGCTAG GCGGCGGGTG GATTCAGCGT
GCAGGCGAAG TGCCACGCGC GCCGGATACA CCGGTCGACT ACGGCAAGGA GGCAGCACCG
GCGTCTGCGT CGGCCGCGAA CGGGTAA
|
|---|
| Protein sequence | MQKHALTATA VALAAALFAT GCTMAPHYKR PDAPVAQAYP AGGVYATQPG AAGARSANGQ
AAAAIGWREF FVDPRLQRLI EIALKNNRDL RVSVLNIEAA RAQYQITRAG LFPTLGGMGT
GNIQRYPQGV SPTNQAYISR TYNVGLSASW ELDLFGRVQS LKDQALAQYL STAYARQASE
ISLVSQVADQ YLTLLSTDDL LKVTEDTLKT AQASYDLTKL QFDNGTGSEL ELRQAQTVVE
TALANQQAQA RARAQALNAL VLLIGEPLPD DLPAGMPLEA QNLLTDVPAG LPSDLLTRRP
DVMQAEQTLL AANANIGAAR AAFFPKISLT GAFGTASPTL GGLFKAGTAA WSFAPSIALP
IFEGGQNIAN LDLANVQKRI EIANYEKAIQ SAFREVSDGL AARGTYDQQI AALERNEHAQ
QRRFDLSDLR YKNGVDSYLS VLTAQTDLYS AQQSLISARL ARWTNLVDLY RALGGGWIQR
AGEVPRAPDT PVDYGKEAAP ASASAANG
|
|---|
| |