| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_6546 |
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| Symbol | |
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| ID | 6125469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010512 |
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| Strand | + |
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| Start bp | 598584 |
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| End bp | 600638 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641647559 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_001774156 |
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| Protein GI | 170735042 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.274998 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGCC GCATGAACAA ATCGGCCCCC TCTCCCTGGT CCGCGCTCGA CGCTGCCATC
GCCCGTGGAC GCGACGCACT CGTGCGCCTT CAGCAACCCG ACGGCAGCTG GTGTTTCGAA
CTCGAATCCG ACGCGACGAT CACCGCGGAA TACATCCTGA TGATGCATTT CATGGACCGG
ATCGACGACG TGCGCCAGGA GAGGATGGCG CGCTACCTGC GCGCGAACCA GCGGCTCGAC
ACGCACGGCG CCTGGGATCT GTACGTCGAC GGCGCGCCGG ACGTGTCGTG CAGCGTGAAG
GCGTACTTCG CGCTGAAGGC GGCCGGCGAC AGCGAACACG CGCCGCACAT GATCCGCGCG
CGCGACGCGA TCCTGAAGCT CGGCGGCGCG GCGCGTTCGA ACGTGTTCAC GCGCATCCTG
CTTGCGACGT TCGGCCAGGT GCCGTGGCGC GCGGCGCCGT TCATGCCGAT CGAATTCGTG
CTGTTCCCGA AGTGGGTGCC GATCTCGATG TACAAGGTCG CGTACTGGGC GCGCACGACG
ATGGTGCCGC TGCTGGTGCT GTGCTCGCTG AAGGCGCGTG CGCGCAATCC GCGCAACGTG
TCGATCCGCG AGCTGTTCGT CACGCCGCCC GAACAGGAGC GCCACTACTT CCTGCCCGCG
CGCGGCATGC GCCGGCTGTT CCTCGCGCTC GACCGCACGG TCCGCCCTAT CGAGCCGCTG
CTGCCGAAGC GGTTGCGCCA GCGCGCGATC CGGCATGCGG AAGCGTGGTG CGCGGAGCGG
ATGAACGGCG AGGACGGGCT CGGCGGCATC TTCCCGCCGA TCGTGTACAG CTACCAGATG
ATGCAGGTGC TCGGCTACCC GGACGACCAT CCGCTGCGGC GCGATTGCGA GAACGCGCTG
GAGAAGCTGC TGGTCACACG GCCGGACGGC AGCATGTACT GCCAGCCGTG CCTGTCGCCG
GTGTGGGACA CCGCGTGGAG CACGATGGCG CTCGAGCAGG CGCGCGGTGT CGCGGCGCCG
GAAACCGGCG ACACGGCTTC CGGCGCACTG CGCGAACTCG ACGAGCGCAT CGCCCGCGCG
TACGACTGGC TGGCCACGCG CCAGGTGAAC GACCTGCGCG GCGACTGGAT CGAGAACGCC
CCGGCCGACG TCGAACCGGG CGGCTGGGCA TTCCAGTACG CGAACCCGTA CTACCCGGAC
ATCGACGACA CGGCGCTCGT CACCGCGATG CTCGATCGCC GCGGCCGCAC GCATCGCGGC
GCGGACGGCA CGCACCCGTA CGCGTCGCGC GTCGCACGCG CGCTCGACTG GATGCGCGGG
CTGCAATCGC GCAACGGCGG CTTCGCCGCG TTCGACGCGG ACTGCGACCG CATGTATCTG
AACGCGATTC CGTTCGCCGA TCACGGCGCG CTGCTCGACC CGCCGACCGA GGACGTATCG
GGCCGCGTGC TGCTGTGCTT CGGCGTGACG AAGCGCGCCG CAGACCGCGC GTCGCTCGCC
CACGCGATCG ACTACGTGAA GCGCACGCAG CAGCCCGACG GCAGCTGGTG GGGCCGCTGG
GGTACGAACT ACCTCTACGG CACGTGGAGC GTGCTCGCCG GCCTCGCGCT CGCCGGCGAG
GACAAGTCGC AACCCTACAT CACCCGCGCG CTCGACTGGC TGCGCGCGCG GCAGCATGCG
GACGGCGGCT GGGGCGAGAC CAACGACAGC TACATCGATC CGAAGCTGGC CGGCACGAAC
GACGGCGAGA GCACGTCGAA CTGCACCGCG TGGGCGCTGC TCGCGCAGAT GGCGTTCGGC
GACTGCGAAT CCGATTCGGT GAAGCGCGGC ATCGCGTATC TTCAGTCGGT GCAGCAGGAA
GACGGCTTCT GGTGGCACCG CTCGCACAAT GCGCCGGGCT TTCCGCGCAT CTTCTACCTG
AAGTATCACG GCTATACCGC TTACTTCCCG CTGTGGGCGC TCGCGCGCTA TCGACGGCTG
GCGGGGGCGA AGGATGCGGA CGCAACCAGG TCGCCTGCAT CCGCCACACC CGCAACGGAC
AACGCGCTCG CCTGA
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| Protein sequence | MIRRMNKSAP SPWSALDAAI ARGRDALVRL QQPDGSWCFE LESDATITAE YILMMHFMDR
IDDVRQERMA RYLRANQRLD THGAWDLYVD GAPDVSCSVK AYFALKAAGD SEHAPHMIRA
RDAILKLGGA ARSNVFTRIL LATFGQVPWR AAPFMPIEFV LFPKWVPISM YKVAYWARTT
MVPLLVLCSL KARARNPRNV SIRELFVTPP EQERHYFLPA RGMRRLFLAL DRTVRPIEPL
LPKRLRQRAI RHAEAWCAER MNGEDGLGGI FPPIVYSYQM MQVLGYPDDH PLRRDCENAL
EKLLVTRPDG SMYCQPCLSP VWDTAWSTMA LEQARGVAAP ETGDTASGAL RELDERIARA
YDWLATRQVN DLRGDWIENA PADVEPGGWA FQYANPYYPD IDDTALVTAM LDRRGRTHRG
ADGTHPYASR VARALDWMRG LQSRNGGFAA FDADCDRMYL NAIPFADHGA LLDPPTEDVS
GRVLLCFGVT KRAADRASLA HAIDYVKRTQ QPDGSWWGRW GTNYLYGTWS VLAGLALAGE
DKSQPYITRA LDWLRARQHA DGGWGETNDS YIDPKLAGTN DGESTSNCTA WALLAQMAFG
DCESDSVKRG IAYLQSVQQE DGFWWHRSHN APGFPRIFYL KYHGYTAYFP LWALARYRRL
AGAKDADATR SPASATPATD NALA
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