Gene Bcenmc03_6248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcenmc03_6248 
Symbol 
ID6125175 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia MC0-3 
KingdomBacteria 
Replicon accessionNC_010512 
Strand
Start bp248548 
End bp249129 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content67% 
IMG OID641647265 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_001773862 
Protein GI170734748 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.00704499 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.924299 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACGGG TGATCGAGAC ACCTTTGCCG GGCGTGCTGC TGATCGAGCC CGGCGTGTTC 
GGCGATGCGC GCGGCTTTTT CGTCGAAAGC TTCCGGGCAA GCTGGCTGCG CGACGCCGGC
GTCGACGCCA CCTTCGTGCA GGACAACCAG TCGCGCTCGC GGCGCGGCGT GCTGCGCGGG
CTGCACTACC AGCGGGTGAA TCCGCAAGGC AAATTGGTGC ACGCGGCGCG CGGCGCGGTC
TACGACGTCG CCGTCGACAT CCGGTATGGC TCGCCGTTCT TCGGCTGCTG GTTCGGTGCG
CAGCTCGACG ACGTATCGCA CCGGATGCTA TGGATTCCGC CCGGCTTCGC GCACGGCTTT
TGCGTGTTGT CCGACGAGGC TGATTTCGCG TACAAGTGCA CGCAGTACTA CGATCCCGAT
TCGGATGCGG GCGTGCGCTG GGACGATCCG GCGATCGGCA TCGACTGGCC GGATTCCGGC
GCACCGTATC AGTTGTCGGA CAAGGATCGG CGGCAGCCGC CGCTCGCCGA ACTCGCCGCC
GGTGCGCCGG CGATGTTGCC AGCCTACGGG AGCGCGCAAT GA
 
Protein sequence
MTRVIETPLP GVLLIEPGVF GDARGFFVES FRASWLRDAG VDATFVQDNQ SRSRRGVLRG 
LHYQRVNPQG KLVHAARGAV YDVAVDIRYG SPFFGCWFGA QLDDVSHRML WIPPGFAHGF
CVLSDEADFA YKCTQYYDPD SDAGVRWDDP AIGIDWPDSG APYQLSDKDR RQPPLAELAA
GAPAMLPAYG SAQ