| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_6775 |
|---|
| Symbol | |
|---|
| ID | 6131636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | - |
|---|
| Start bp | 7447805 |
|---|
| End bp | 7449805 |
|---|
| Gene Length | 2001 bp |
|---|
| Protein Length | 666 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641646856 |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_001773454 |
|---|
| Protein GI | 170744799 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0183053 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACGA AGGCAACGGA ACGAGAAGAG ACCGAAGCGG CTCCCGAGCA GCAGACCGAC
GGACCGCTCC TCGACCTGAC GGATGCCTCC GTCAAGCGGA TGATCAAGCT GGCCAAGAAG
CGCGGCTACG TCACCTACGA CGAGCTGAAC GAGGTGCTGC CTCAGGAGGA GTTCACCTCC
GAGCAGATCG AGGACGTGCT CGGCCAGCTG TCGGAACTCG GCGTGAACGT CGTCGAGGCC
GAGGAGGCGG ACGACAACCA GGCCGAGGGG GCCGCGGCCG AGGGCGGCGG CGACGACGAG
GAGGCCAGCG AGGGGACCGA GGTCGCCGAG GTCGCGCCGA ACCGGCCGGC CGTGCTGCGC
ACCGAGACCA CCAAGGAGCC CACCGACCGC ACGGACGACC CCGTCCGCAT GTACCTGCGC
GAGATGGGCT CGGTGGAGCT CCTCTCCCGC GAGGGCGAGA TCGCCATCGC CAAGCGCATC
GAGGCCGGGC GCGAGGCGAT GATCGCGGGC CTGTGCGAGA GCCCGCTGAC CTTCCAGGCG
ATCATCATCT GGCGCGACGA ACTCGTCGAC GGCCGGGTGC TGCTGCGCGA CATCATCGAC
CTCGAAGCCA CCTATGCGGG GCCGGACGGC CGCGCCGGCC CGGCCGAGGG CGAGGTGGAG
GCCGAGGGCG ACGGGCCGGA GGGCGAGGTT GCCGCGCCGG AGGGCGACGG CGACGAGGAC
GACCTCGAGA ACAACGTCTC GCTCTCGGCC ATGGAGGCCG AGCTGAAGCC GCGGGTGCTC
GAGACCTTCG ACGCGATCGC CGAGAATTAC CGCAAGCTGC GCCAGGTGCA GGCCCAGCAG
GCCGAGACGC GGCTGCAGGG GGCGGGGGCG AACGAGGGCC AGAGCCGGCA ATACGCCGAG
CTCAAGAGCC GCATCGTCGC GGACGTGAAG TCGCTCTCCC TCAACGCCAA CCGGATCGAG
GCGCTGGTCG AGCAGCTCTA CGACATCAAC AAGCGGCTGA TCTCCCAGGA GGGCCGCCTG
ATGCGGCTCG CCGAGAGCCA CGGCGTCGCC CGCGACGAGT TCCTGCGCCA CTACCAGGGC
CAGGAGCTCG ATCCGCACTG GGTCGAGCGG GTGGGCAAGC TCGGCGGCAA GGGCTGGAAG
AACTTCACCG AGCGCGGGCA GGACGGGATC AAGACCCTGC GCGAGCAGAT CATGTCGCTC
GCCTCCGAGA CCGGCCTGGA GATCCAGGAA TACCGCAAGA TCGTCCACAT GGTCCAGAAG
GGCGAGCGCG AAGCCCGCCA GGCCAAGAAG GAGATGATCG AGGCGAATCT GCGGCTGGTG
ATCTCGATCG CCAAGAAGTA CACGAACCGC GGCCTGCAGT TCCTGGACCT GATCCAGGAG
GGCAATATCG GCCTGATGAA GGCGGTGGAC AAGTTCGAGT ACCGGCGCGG CTACAAGTTC
TCGACCTACG CGACGTGGTG GATCCGGCAG GCGATCACGC GCTCGATCGC CGATCAGGCC
CGCACGATCC GCATCCCGGT GCACATGATC GAGACGATCA ACAAGATCGT GCGGACCTCG
CGGCAGATGC TGCACGAGAT CGGCCGCGAG CCGACGCCGG AGGAGCTCGC CGAGAAGCTG
GCGATGCCGC TGGAGAAGGT GCGCAAGGTC CTCAAGATCG CCAAGGAGCC GATCTCCCTC
GAGACGCCGA TCGGCGACGA GGAGGATTCG CATCTCGGCG ACTTCATCGA GGACAAGAAC
GTCGTGCTGC CGATCGACGC GGCGATCCAG TCGAACCTGC GCGAGACGAC GACGCGGGTG
CTGGCCTCGC TGACGCCGCG CGAGGAGCGC GTGCTGCGCA TGCGCTTCGG CATCGGCATG
AACACCGACC ACACCCTGGA GGAGGTCGGC CAGCAATTCT CGGTGACCCG CGAGCGCATC
CGCCAGATCG AGGCGAAGGC GCTGCGCAAG CTCAAGCACC CCAGCCGGTC GCGCAAGCTC
AGGAGCTTCC TCGACAATTG A
|
|---|
| Protein sequence | MATKATEREE TEAAPEQQTD GPLLDLTDAS VKRMIKLAKK RGYVTYDELN EVLPQEEFTS
EQIEDVLGQL SELGVNVVEA EEADDNQAEG AAAEGGGDDE EASEGTEVAE VAPNRPAVLR
TETTKEPTDR TDDPVRMYLR EMGSVELLSR EGEIAIAKRI EAGREAMIAG LCESPLTFQA
IIIWRDELVD GRVLLRDIID LEATYAGPDG RAGPAEGEVE AEGDGPEGEV AAPEGDGDED
DLENNVSLSA MEAELKPRVL ETFDAIAENY RKLRQVQAQQ AETRLQGAGA NEGQSRQYAE
LKSRIVADVK SLSLNANRIE ALVEQLYDIN KRLISQEGRL MRLAESHGVA RDEFLRHYQG
QELDPHWVER VGKLGGKGWK NFTERGQDGI KTLREQIMSL ASETGLEIQE YRKIVHMVQK
GEREARQAKK EMIEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF
STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKIVRTS RQMLHEIGRE PTPEELAEKL
AMPLEKVRKV LKIAKEPISL ETPIGDEEDS HLGDFIEDKN VVLPIDAAIQ SNLRETTTRV
LASLTPREER VLRMRFGIGM NTDHTLEEVG QQFSVTRERI RQIEAKALRK LKHPSRSRKL
RSFLDN
|
|---|
| |